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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0112300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4 (0.0776) R2 : 0.485
β1 : 2.1 (0.44) R2dD : 0.0702 R2D : 0.136
β2 : 1.28 (0.177) R2dC : 0.0587 R2C : 0.0411
β3 : 3.31 (0.249) R2dE : 0.252 R2E : 0.162
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 4.59 (1.08) R2dD*E : 0.0544 R2D*E : 0.152
γ1 : 1.03 (0.191) R2dN8 : 0.0628 R2N8 : -0.0558
σ : 1.39
deviance : 886.29
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_____
C
peak time of C : 22.8
E
wheather : radiation
threshold : 0.8106
memory length : 6034
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17.1
open length of G : 1.04

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
875.43 1.39 4 2.18 1.29 3.33 1.62 4.54 1.02 23 0.8199 6022 17.1 1.04
917.85 1.41 4 3.73 1.29 3.33 1.62 -- 1.02 23 0.8199 6022 17.1 1.04
886.29 1.39 4 2.1 1.28 3.31 -- 4.59 1.03 22.8 0.8106 6034 17.1 1.04
923.08 1.42 4 3.54 1.25 3.49 -- -- 1.27 22.7 0.8146 6024 17.1 1.05
925.96 1.42 3.97 1.88 -- 3.85 -- 5.62 0.608 -- 0.662 6558 17.2 2.14
1319.95 1.7 4.17 3.39 1.25 -- 1.41 -- 0.305 22.3 -- -- -- --
1328.01 1.71 4.17 3.34 1.25 -- -- -- 0.302 22.3 -- -- -- --
988.89 1.46 3.99 3.72 -- 3.44 -- -- 1.25 -- 0.8299 5161 17.1 1.02
1065.1 1.52 4.1 -- 1.34 3.88 -- -- 0.77 22.5 2.372 11496 17.2 0.915
1422.79 1.76 4.14 3.36 -- -- -- -- 0.305 -- -- -- -- --
1621.5 1.88 4.26 -- 1.27 -- -- -- -0.0699 22.5 -- -- -- --
1112.84 1.55 4.2 -- -- 4.04 -- -- 0.578 -- 2.382 28128 17.2 2.23
1719.89 1.94 4.22 -- -- -- -- -- -0.0673 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 876.67 radiation 10.0 14400 < th dose independent rect. 15 15
3 878.89 humidity 90.0 43200 < th dose independent rect. 21 1
5 879.96 radiation 10.0 14400 < th dose independent rect. 15 10
7 879.97 radiation 10.0 14400 < th dose independent rect. 15 6
12 880.02 radiation 10.0 14400 < th dose independent rect. 15 4
15 880.35 humidity 90.0 43200 > th dose dependent rect. 21 1
19 882.47 radiation 10.0 14400 < th dose independent sin 13 NA
22 882.64 radiation 1.0 14400 > th dose dependent rect. 17 13
38 883.96 radiation 1.0 14400 < th dose independent rect. 17 1
43 885.33 radiation 20.0 14400 < th dose dependent rect. 17 13
64 886.23 radiation 1.0 14400 < th dose dependent rect. 17 1
71 887.36 radiation 40.0 14400 > th dose dependent rect. 13 20
74 888.38 humidity 90.0 43200 > th dose independent rect. 21 1
77 888.49 radiation 10.0 14400 < th dose dependent rect. 3 3
81 888.73 radiation 10.0 14400 < th dose dependent rect. 20 10
82 888.75 radiation 30.0 14400 < th dose dependent rect. 20 10
95 889.31 radiation 10.0 14400 < th dose dependent rect. 22 8
96 889.33 radiation 1.0 14400 < th dose independent rect. 8 10
132 890.87 radiation 40.0 14400 > th dose dependent rect. 13 3
162 891.56 radiation 40.0 14400 > th dose dependent sin 13 NA
167 891.83 humidity 90.0 43200 < th dose independent rect. 18 4
172 892.25 radiation 1.0 14400 > th dose dependent rect. 17 2
196 892.77 radiation 1.0 14400 > th dose dependent rect. 5 1
223 893.48 humidity 90.0 43200 < th dose independent rect. 17 9
245 894.05 radiation 1.0 14400 < th dose independent rect. 8 13
247 894.07 radiation 1.0 14400 < th dose independent rect. 8 16
250 894.11 radiation 1.0 14400 < th dose independent rect. 8 20
287 895.26 radiation 1.0 14400 > th dose independent rect. 17 1
300 895.42 radiation 20.0 14400 > th dose dependent rect. 15 17
303 895.45 humidity 90.0 43200 < th dose independent sin 16 NA
375 896.53 radiation 40.0 14400 < th dose dependent rect. 17 4
376 896.53 radiation 40.0 14400 < th dose dependent rect. 17 7
391 896.78 radiation 40.0 14400 < th dose dependent rect. 17 9
407 896.95 radiation 20.0 14400 < th dose dependent rect. 17 2
415 897.05 radiation 30.0 14400 < th dose independent sin 13 NA
422 897.13 radiation 1.0 14400 > th dose independent rect. 8 10
480 898.81 humidity 60.0 43200 > th dose independent rect. 14 2
491 899.15 radiation 1.0 14400 < th dose dependent rect. 17 6
494 899.17 radiation 1.0 14400 < th dose dependent rect. 17 4
525 899.65 humidity 90.0 43200 < th dose independent rect. 10 20
602 900.55 humidity 90.0 43200 < th dose independent rect. 18 1
640 900.96 humidity 90.0 43200 < th dose independent rect. 15 15
670 901.15 humidity 90.0 43200 < th dose independent rect. 17 20
671 901.16 humidity 90.0 43200 > th dose independent rect. 17 9
678 901.33 humidity 80.0 43200 > th dose dependent rect. 17 2
723 901.66 precipitation 0.1 43200 > th dose dependent rect. 17 10
785 902.33 radiation 1.0 14400 > th dose independent sin 17 NA
790 902.38 radiation 30.0 14400 < th dose independent rect. 15 6
791 902.38 radiation 30.0 14400 < th dose independent rect. 15 9
794 902.41 radiation 30.0 14400 < th dose independent rect. 15 2
800 902.44 radiation 30.0 14400 < th dose independent rect. 15 11
824 902.56 wind 5.0 43200 > th dose independent rect. 11 1
827 902.57 radiation 30.0 14400 < th dose independent rect. 15 13
861 902.80 precipitation 0.1 43200 < th dose independent rect. 17 6
864 902.80 precipitation 0.1 43200 < th dose dependent rect. 17 6
868 902.85 precipitation 0.1 43200 > th dose independent rect. 17 6
883 902.96 radiation 10.0 14400 < th dose dependent sin 13 NA
943 903.42 radiation 1.0 14400 < th dose dependent rect. 8 22
978 903.53 radiation 1.0 14400 < th dose dependent sin 16 NA