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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0112200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.53 (0.0821) R2 : 0.51
β1 : 1.83 (0.472) R2dD : 0.04 R2D : 0.0983
β2 : 1.61 (0.189) R2dC : 0.0767 R2C : 0.0502
β3 : 3.7 (0.269) R2dE : 0.263 R2E : 0.181
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 5.14 (1.16) R2dD*E : 0.0563 R2D*E : 0.16
γ1 : 1.35 (0.205) R2dN8 : 0.0909 R2N8 : -0.0617
σ : 1.48
deviance : 1016.55
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_____
C
peak time of C : 23.2
E
wheather : radiation
threshold : 0.9245
memory length : 8986
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17.1
open length of G : 1.08

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1008.23 1.49 4.53 1.87 1.64 3.69 1.48 5.04 1.36 23.3 0.921 8843 17.1 1.03
1049.26 1.51 4.47 3.45 1.58 3.99 1.5 -- 1.74 23.3 0.9498 8873 17.1 1.05
1016.55 1.48 4.53 1.83 1.61 3.7 -- 5.14 1.35 23.2 0.9245 8986 17.1 1.08
1040.35 1.5 4.44 3.54 1.62 4.01 -- -- 1.84 23 1.059 18627 17 1.09
1084.93 1.53 4.4 1.61 -- 4.63 -- 4.74 1.23 -- 1.153 9386 17.3 2.04
1578.05 1.86 4.77 3.57 1.59 -- 1.37 -- 0.475 22.8 -- -- -- --
1585.86 1.86 4.77 3.52 1.58 -- -- -- 0.471 22.7 -- -- -- --
1130.81 1.57 4.48 2.05 -- 4.68 -- -- 1.47 -- 1.486 16425 17.3 2.42
1181.06 1.6 4.49 -- 1.71 4.57 -- -- 1.92 22.8 2.12 8639 17.2 2
1740.04 1.95 4.73 3.55 -- -- -- -- 0.48 -- -- -- -- --
1911.88 2.05 4.86 -- 1.61 -- -- -- 0.0793 22.9 -- -- -- --
1238.72 1.64 4.51 -- -- 5.71 -- -- 1.7 -- 2.19 19300 17.2 2.6
2072.18 2.12 4.82 -- -- -- -- -- 0.0864 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1007.39 humidity 90 43200 > th dose dependent rect. 21 1
2 1009.61 humidity 90 43200 < th dose independent rect. 21 1
5 1014.84 humidity 90 43200 > th dose independent rect. 21 1
7 1016.80 radiation 1 14400 < th dose independent rect. 17 1
8 1017.12 radiation 10 14400 < th dose independent rect. 15 15
16 1021.80 radiation 10 14400 < th dose independent rect. 16 13
19 1022.02 radiation 10 14400 < th dose independent rect. 16 8
22 1022.06 radiation 10 14400 < th dose independent rect. 16 5
25 1022.09 radiation 10 14400 < th dose independent rect. 16 10
27 1022.15 radiation 10 14400 < th dose independent rect. 16 3
30 1022.19 humidity 90 43200 < th dose independent rect. 17 5
55 1025.47 radiation 1 14400 < th dose dependent rect. 17 1
59 1026.80 radiation 1 14400 > th dose dependent rect. 17 13
73 1028.26 humidity 90 43200 < th dose independent rect. 18 1
79 1028.87 radiation 10 14400 < th dose independent sin 13 NA
87 1029.63 radiation 1 14400 > th dose independent rect. 17 1
88 1029.67 humidity 90 43200 < th dose independent rect. 17 9
102 1030.19 humidity 90 43200 < th dose independent sin 16 NA
107 1030.68 temperature 20 43200 > th dose independent rect. 19 1
127 1031.70 radiation 20 14400 < th dose dependent rect. 17 13
133 1031.96 humidity 90 43200 > th dose independent rect. 18 5
145 1032.53 radiation 1 14400 > th dose dependent rect. 16 15
155 1032.91 humidity 90 43200 < th dose independent rect. 12 14
159 1033.44 humidity 90 43200 < th dose independent rect. 10 17
172 1033.90 humidity 90 43200 < th dose independent rect. 9 19
181 1034.15 radiation 1 14400 < th dose independent rect. 8 10
236 1035.99 radiation 1 14400 < th dose dependent rect. 17 6
249 1036.23 temperature 20 43200 < th dose independent rect. 20 1
251 1036.38 radiation 1 14400 < th dose independent rect. 8 16
254 1036.43 radiation 1 14400 < th dose independent rect. 8 13
260 1036.46 radiation 1 14400 < th dose independent rect. 8 22
264 1036.50 radiation 1 14400 < th dose independent rect. 8 20
265 1036.53 radiation 1 14400 < th dose independent rect. 8 18
276 1036.67 humidity 90 43200 > th dose dependent rect. 10 15
304 1037.08 radiation 1 14400 > th dose independent rect. 17 13
340 1037.60 humidity 90 43200 > th dose dependent sin 18 NA
379 1038.08 radiation 40 14400 < th dose dependent rect. 16 15
393 1038.32 humidity 90 43200 > th dose independent sin 17 NA
410 1038.67 humidity 90 43200 < th dose independent rect. 17 20
434 1039.11 humidity 90 43200 > th dose independent rect. 9 18
436 1039.12 radiation 1 14400 > th dose dependent rect. 17 2
453 1039.22 humidity 80 43200 > th dose dependent rect. 17 1
475 1039.41 radiation 20 14400 < th dose dependent rect. 3 3
476 1039.48 radiation 40 14400 < th dose dependent rect. 20 10
504 1039.82 humidity 90 43200 > th dose independent rect. 12 14
515 1039.91 temperature 25 1440 > th dose dependent rect. 11 6
535 1040.27 temperature 20 43200 > th dose dependent rect. 17 1
540 1040.32 humidity 90 43200 < th dose independent rect. 24 23
550 1040.42 wind 5 43200 > th dose independent rect. 11 1
572 1040.74 radiation 10 14400 < th dose dependent rect. 22 8
577 1040.80 temperature 25 43200 < th dose dependent rect. 17 1
592 1040.93 humidity 90 43200 < th dose independent rect. 12 23
603 1041.02 radiation 20 14400 > th dose dependent rect. 15 17
613 1041.08 radiation 1 14400 > th dose independent rect. 8 22
617 1041.15 humidity 90 43200 < th dose independent no NA NA
630 1041.40 radiation 1 14400 < th dose independent rect. 17 18
674 1041.93 humidity 90 43200 < th dose independent rect. 3 23
675 1041.95 radiation 1 14400 > th dose independent sin 16 NA
702 1042.27 radiation 1 14400 > th dose independent rect. 8 11
713 1042.27 humidity 90 43200 < th dose independent rect. 20 23
737 1042.56 radiation 1 14400 > th dose dependent rect. 4 2
824 1043.55 radiation 1 14400 < th dose dependent sin 16 NA
840 1043.68 temperature 20 43200 > th dose independent rect. 12 13
875 1043.92 radiation 40 14400 < th dose dependent rect. 17 7
909 1044.22 humidity 90 43200 > th dose independent rect. 18 1
911 1044.23 radiation 40 14400 < th dose dependent rect. 17 4
914 1044.27 radiation 1 14400 > th dose independent rect. 13 17
922 1044.34 temperature 25 1440 > th dose dependent rect. 15 2
940 1044.45 temperature 25 43200 < th dose dependent rect. 17 5
966 1044.66 temperature 25 43200 < th dose dependent rect. 21 1
969 1044.68 radiation 20 14400 < th dose dependent rect. 17 9
972 1044.70 humidity 90 43200 > th dose independent rect. 17 20
976 1044.71 radiation 20 14400 < th dose dependent rect. 17 2
985 1044.77 wind 5 43200 < th dose independent rect. 11 1
991 1044.80 humidity 60 43200 > th dose independent rect. 14 2