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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0111800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.6 (0.0512) R2 : 0.103
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.906 (0.182) R2dE : 0.0502 R2E : 0.0515
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.485 (0.109) R2dN8 : 0.0517 R2N8 : 0.053
σ : 0.962
deviance : 424.14
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1000
memory length : 40
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
414.95 0.949 3.79 -1.13 0.00354 -3.83 1.36 16.5 -0.48 4.49 1000 10 -- --
418.83 0.96 3.6 -0.0291 0.00905 -0.924 1.38 -- -0.481 4.36 1000 10 -- --
419.71 0.954 3.81 -1.23 0.0629 -4.08 -- 17.9 -0.487 9.3 1000 41 -- --
423.99 0.965 3.6 -0.0386 0.0453 -0.912 -- -- -0.489 8.54 1000 41 -- --
419.93 0.954 3.81 -1.21 -- -4.03 -- 17.7 -0.486 -- 1000 40 -- --
442.23 0.986 3.61 0.135 0.0102 -- -1.32 -- -0.543 16.4 -- -- -- --
446.81 0.99 3.62 0.125 0.0533 -- -- -- -0.55 10.3 -- -- -- --
424.1 0.963 3.6 -0.0385 -- -0.913 -- -- -0.489 -- 1000 40 -- --
424.02 0.964 3.6 -- 0.0452 -0.906 -- -- -0.485 8.62 1000 35 -- --
446.98 0.988 3.62 0.124 -- -- -- -- -0.55 -- -- -- -- --
447.22 0.989 3.62 -- 0.0527 -- -- -- -0.564 10.1 -- -- -- --
424.14 0.962 3.6 -- -- -0.906 -- -- -0.485 -- 1000 40 -- --
447.39 0.987 3.62 -- -- -- -- -- -0.564 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 401.72 atmosphere 1005 90 > th dose independent rect. 20 18
4 402.76 atmosphere 1000 270 > th dose dependent rect. 17 18
6 403.56 atmosphere 1000 30 > th dose dependent rect. 20 18
13 404.04 atmosphere 1010 270 < th dose dependent sin 9 NA
14 404.12 wind 1 14400 < th dose dependent rect. 4 1
16 404.31 atmosphere 1005 270 > th dose independent rect. 17 18
19 404.47 atmosphere 1000 30 > th dose dependent rect. 17 21
28 404.81 atmosphere 1000 270 > th dose dependent sin 9 NA
30 404.94 atmosphere 1010 720 < th dose dependent rect. 18 11
32 404.98 atmosphere 1010 720 < th dose dependent rect. 20 7
37 405.14 atmosphere 1010 720 < th dose dependent rect. 19 9
44 405.34 humidity 80 14400 > th dose independent rect. 18 1
51 405.56 humidity 80 14400 < th dose independent rect. 18 1
60 405.84 atmosphere 1000 720 > th dose dependent rect. 19 8
62 405.89 atmosphere 1000 720 > th dose dependent rect. 17 11
74 406.04 humidity 80 14400 < th dose independent rect. 16 3
105 406.70 humidity 70 14400 > th dose dependent rect. 20 1
109 406.79 humidity 50 14400 > th dose dependent rect. 20 1
117 406.90 humidity 70 14400 > th dose dependent rect. 18 3
127 407.01 humidity 80 14400 < th dose independent rect. 6 15
128 407.01 atmosphere 1000 30 < th dose independent rect. 21 17
162 407.30 humidity 70 14400 > th dose independent rect. 15 1
165 407.32 humidity 80 14400 > th dose independent rect. 11 10
177 407.40 humidity 50 14400 > th dose dependent rect. 18 3
180 407.42 humidity 80 14400 < th dose independent rect. 11 10
198 407.52 atmosphere 1010 270 < th dose dependent rect. 21 12
223 407.65 humidity 80 14400 > th dose independent rect. 5 16
224 407.65 atmosphere 1010 720 < th dose dependent sin 12 NA
233 407.69 humidity 80 14400 > th dose independent rect. 14 7
238 407.71 humidity 80 14400 < th dose independent sin 20 NA
242 407.71 atmosphere 1010 90 < th dose dependent rect. 24 11
247 407.72 humidity 90 14400 < th dose dependent rect. 18 3
263 407.77 humidity 80 14400 > th dose independent sin 19 NA
294 407.88 humidity 70 14400 > th dose dependent rect. 12 9
428 408.30 wind 1 14400 < th dose independent rect. 4 1
472 408.41 humidity 90 14400 < th dose dependent rect. 20 1
534 408.53 atmosphere 1010 90 < th dose dependent rect. 20 15
545 408.56 atmosphere 1000 10 > th dose independent rect. 17 21
591 408.71 humidity 70 14400 > th dose dependent sin 19 NA
594 408.72 humidity 80 14400 < th dose independent rect. 6 6
645 408.87 atmosphere 1005 90 < th dose independent rect. 24 11
658 408.92 wind 1 14400 > th dose independent rect. 4 1
668 408.93 humidity 70 14400 > th dose dependent rect. 6 16
700 409.02 humidity 80 14400 < th dose independent rect. 10 23
713 409.07 humidity 70 14400 > th dose independent rect. 14 19
735 409.13 humidity 80 14400 < th dose independent rect. 16 23
755 409.19 humidity 80 14400 < th dose independent no NA NA
825 409.37 humidity 80 14400 > th dose independent rect. 16 23
829 409.39 atmosphere 1000 10 > th dose independent rect. 22 15
843 409.43 humidity 80 14400 < th dose independent rect. 13 23
844 409.44 humidity 80 14400 > th dose independent no NA NA
876 409.51 humidity 80 14400 < th dose dependent rect. 16 17
927 409.64 humidity 80 14400 > th dose independent rect. 14 23
981 409.78 atmosphere 1000 720 > th dose dependent sin 13 NA
996 409.82 atmosphere 1000 10 < th dose independent rect. 21 15