Os08g0110500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to E3 ubiquitin ligase PUB14 (EC 6.3.2.-) (Prototypical U-box domain protein 14).
FiT-DB / Search/ Help/ Sample detail
|
Os08g0110500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to E3 ubiquitin ligase PUB14 (EC 6.3.2.-) (Prototypical U-box domain protein 14).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.4 | 0.217 | 10.7 | 1.16 | 0.508 | -0.221 | -0.565 | 3.27 | 0.193 | 6.61 | 30.02 | 1497 | -- | -- |
| 21.88 | 0.218 | 10.7 | 0.547 | 0.529 | 0.214 | -0.367 | -- | 0.191 | 6.5 | 30.4 | 4367 | -- | -- |
| 21.77 | 0.217 | 10.7 | 1.08 | 0.526 | -0.212 | -- | 3.87 | 0.192 | 6.6 | 30.01 | 2039 | -- | -- |
| 22.47 | 0.221 | 10.7 | 0.516 | 0.517 | 0.228 | -- | -- | 0.178 | 6.73 | 30.3 | 4366 | -- | -- |
| 35.42 | 0.277 | 10.6 | 1.33 | -- | -0.304 | -- | 4.02 | 0.215 | -- | 30.1 | 1465 | -- | -- |
| 23.42 | 0.227 | 10.7 | 0.57 | 0.524 | -- | -0.549 | -- | 0.132 | 6.57 | -- | -- | -- | -- |
| 24.17 | 0.23 | 10.7 | 0.563 | 0.522 | -- | -- | -- | 0.134 | 6.62 | -- | -- | -- | -- |
| 36.42 | 0.281 | 10.7 | 0.515 | -- | 0.235 | -- | -- | 0.186 | -- | 30.31 | 4301 | -- | -- |
| 28.96 | 0.251 | 10.7 | -- | 0.522 | 0.326 | -- | -- | 0.133 | 6.73 | 30.14 | 4013 | -- | -- |
| 38.37 | 0.289 | 10.7 | 0.575 | -- | -- | -- | -- | 0.144 | -- | -- | -- | -- | -- |
| 32.51 | 0.267 | 10.8 | -- | 0.529 | -- | -- | -- | 0.0709 | 6.55 | -- | -- | -- | -- |
| 43.2 | 0.306 | 10.7 | -- | -- | 0.327 | -- | -- | 0.137 | -- | 30 | 4257 | -- | -- |
| 47.09 | 0.32 | 10.8 | -- | -- | -- | -- | -- | 0.0803 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.70 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 5 |
| 4 | 20.72 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 6 |
| 5 | 20.73 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 3 |
| 8 | 20.75 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 8 |
| 23 | 20.79 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 37 | 20.82 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 9 |
| 52 | 20.85 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 14 | 19 |
| 113 | 20.97 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 115 | 20.97 | temperature | 25 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 126 | 20.99 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 134 | 21.01 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 166 | 21.08 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 206 | 21.10 | temperature | 30 | 4320 | < th | dose independent | rect. | 5 | 7 |
| 312 | 21.19 | temperature | 25 | 4320 | < th | dose independent | sin | 11 | NA |
| 347 | 21.21 | temperature | 30 | 1440 | > th | dose independent | sin | 6 | NA |
| 359 | 21.22 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 361 | 21.22 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 398 | 21.24 | temperature | 25 | 4320 | > th | dose independent | sin | 11 | NA |
| 428 | 21.25 | temperature | 30 | 4320 | > th | dose dependent | sin | 7 | NA |
| 453 | 21.28 | temperature | 30 | 1440 | < th | dose independent | sin | 7 | NA |
| 510 | 21.30 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 7 |
| 558 | 21.32 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 692 | 21.36 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 716 | 21.36 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 24 | 20 |
| 722 | 21.36 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 751 | 21.37 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 22 | 22 |
| 765 | 21.38 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 11 |
| 778 | 21.38 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 19 |
| 792 | 21.38 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 795 | 21.38 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 23 | 20 |
| 802 | 21.39 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 3 |
| 814 | 21.39 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 815 | 21.39 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 7 |
| 845 | 21.39 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 24 | 18 |
| 852 | 21.39 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 22 |
| 906 | 21.40 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 17 | 10 |
| 913 | 21.40 | temperature | 30 | 720 | < th | dose independent | rect. | 22 | 14 |
| 918 | 21.40 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 4 | 23 |
| 920 | 21.40 | temperature | 25 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 928 | 21.40 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 23 | 18 |
| 933 | 21.41 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 934 | 21.41 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 963 | 21.41 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 972 | 21.42 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 3 |