FiT-DB / Search/ Help/ Sample detail

Os08g0110400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF266, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.1 (0.0212) R2 : 0.468
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.841 (0.0542) R2dC : 0.282 R2C : 0.281
β3 : -0.744 (0.0608) R2dE : 0.203 R2E : 0.177
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0783 (0.0472) R2dN8 : 0.0048 R2N8 : -0.0169
σ : 0.39
deviance : 70.12
__
_____
C
peak time of C : 6.76
E
wheather : temperature
threshold : 22.2
memory length : 7557
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
58.03 0.358 12 1.24 0.842 -1.09 0.634 3.17 0.335 6.33 19.69 2529 -- --
65.59 0.377 12.1 0.617 0.802 -1.24 0.707 -- 0.229 6.55 14.09 9197 -- --
59.01 0.358 12 1.25 0.849 -1.09 -- 3.18 0.335 6.33 19.65 2557 -- --
66.27 0.379 12.1 0.612 0.835 -1.24 -- -- 0.251 6.74 15.04 9068 -- --
86.72 0.434 12 1.29 -- -1.28 -- 3.55 0.378 -- 21.9 1978 -- --
92.04 0.45 12.1 -0.0915 0.845 -- 0.6 -- -0.144 6.87 -- -- -- --
92.96 0.452 12.1 -0.0806 0.847 -- -- -- -0.146 6.9 -- -- -- --
102.24 0.471 12.1 0.596 -- -1.22 -- -- 0.238 -- 15.56 7813 -- --
70.12 0.39 12.1 -- 0.841 -0.744 -- -- 0.0783 6.76 22.2 7557 -- --
130.58 0.534 12.2 -0.0627 -- -- -- -- -0.13 -- -- -- -- --
93.13 0.451 12.1 -- 0.846 -- -- -- -0.137 6.91 -- -- -- --
106.09 0.48 12.1 -- -- -0.764 -- -- 0.034 -- 22.6 6355 -- --
130.68 0.534 12.2 -- -- -- -- -- -0.123 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 51.55 radiation 1 14400 > th dose independent rect. 18 11
2 51.83 radiation 1 14400 > th dose independent rect. 18 1
12 53.52 humidity 90 14400 > th dose dependent rect. 21 4
17 54.26 temperature 20 1440 > th dose dependent rect. 20 2
26 54.72 radiation 1 14400 < th dose independent rect. 18 11
30 54.82 temperature 20 1440 > th dose dependent rect. 18 15
33 54.87 temperature 20 1440 > th dose dependent rect. 6 2
44 55.13 radiation 1 14400 < th dose independent rect. 18 8
48 55.16 radiation 1 14400 < th dose dependent rect. 4 1
49 55.16 humidity 90 14400 > th dose dependent rect. 18 9
59 55.28 radiation 1 14400 < th dose independent rect. 18 2
72 55.39 humidity 90 14400 > th dose dependent rect. 17 11
73 55.39 humidity 90 14400 > th dose dependent rect. 15 14
75 55.41 humidity 90 14400 > th dose dependent sin 13 NA
142 55.95 temperature 20 1440 > th dose dependent sin 11 NA
241 56.87 wind 9 43200 > th dose independent rect. 18 21
252 56.94 wind 7 43200 > th dose dependent rect. 5 10
256 56.96 wind 3 43200 < th dose dependent rect. 8 1
258 56.98 radiation 1 14400 < th dose dependent rect. 18 1
263 57.00 radiation 1 14400 < th dose dependent rect. 18 5
273 57.05 wind 9 43200 < th dose independent rect. 2 13
276 57.07 wind 9 43200 < th dose independent rect. 5 10
277 57.07 wind 9 43200 > th dose dependent rect. 10 5
288 57.14 wind 9 43200 < th dose independent rect. 18 21
289 57.15 wind 9 43200 < th dose independent rect. 7 8
290 57.15 wind 9 43200 < th dose independent rect. 24 15
293 57.16 wind 9 43200 > th dose independent rect. 8 7
327 57.35 wind 9 43200 > th dose independent rect. 5 10
351 57.50 humidity 90 14400 > th dose independent rect. 21 3
352 57.50 wind 9 43200 > th dose independent rect. 2 13
353 57.51 wind 9 43200 > th dose independent rect. 24 15
413 57.85 wind 7 43200 > th dose dependent rect. 24 15
428 57.91 radiation 1 14400 > th dose independent rect. 5 1
429 57.91 humidity 90 14400 > th dose independent rect. 18 10
431 57.91 humidity 90 14400 > th dose dependent no NA NA
438 57.98 radiation 1 14400 < th dose independent rect. 5 1
458 58.14 humidity 90 14400 > th dose dependent rect. 2 23
472 58.23 wind 1 43200 < th dose dependent rect. 24 2
496 58.37 humidity 90 14400 > th dose dependent rect. 23 23
571 58.82 humidity 90 14400 < th dose independent rect. 17 10
607 58.97 wind 3 43200 > th dose independent rect. 8 6
609 58.97 temperature 25 1440 < th dose dependent rect. 3 1
613 58.98 humidity 80 43200 < th dose dependent rect. 21 2
616 59.00 humidity 90 14400 > th dose independent rect. 22 1
622 59.03 radiation 40 43200 > th dose dependent rect. 11 1
645 59.12 temperature 20 4320 > th dose independent rect. 22 2
679 59.19 humidity 90 14400 > th dose independent sin 14 NA
680 59.19 temperature 15 1440 > th dose dependent rect. 3 1
681 59.19 wind 1 43200 > th dose dependent rect. 8 7
686 59.21 wind 3 43200 < th dose independent rect. 8 6
687 59.21 humidity 90 14400 < th dose independent rect. 18 7
691 59.22 wind 9 43200 < th dose independent rect. 9 5
713 59.27 wind 7 43200 > th dose dependent sin 2 NA
716 59.28 temperature 25 1440 < th dose dependent rect. 2 3
736 59.32 temperature 20 4320 < th dose independent rect. 22 2
750 59.35 radiation 20 43200 < th dose independent rect. 8 1
757 59.35 temperature 30 1440 < th dose dependent rect. 18 15
787 59.41 temperature 30 1440 < th dose dependent rect. 2 7
828 59.48 wind 3 43200 > th dose dependent rect. 6 11
844 59.51 humidity 90 43200 > th dose dependent rect. 5 2
850 59.52 radiation 1 43200 < th dose dependent rect. 21 8
872 59.56 humidity 90 14400 < th dose independent rect. 20 5
909 59.61 wind 9 43200 < th dose dependent rect. 8 7
977 59.71 radiation 1 14400 < th dose independent rect. 23 7
987 59.72 humidity 90 43200 > th dose dependent rect. 13 2