Os08g0109900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tudor domain containing protein.
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Os08g0109900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tudor domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.92 | 0.265 | 11.8 | -0.643 | 0.138 | -0.533 | 0.00853 | -1.25 | -0.0795 | 22.9 | 9.968 | 735 | -- | -- |
| 32.73 | 0.266 | 11.7 | -0.434 | 0.126 | -0.585 | -0.252 | -- | -0.0101 | 21.2 | 7.729 | 546 | -- | -- |
| 31.92 | 0.263 | 11.8 | -0.642 | 0.137 | -0.532 | -- | -1.24 | -0.0793 | 22.9 | 9.963 | 735 | -- | -- |
| 32.94 | 0.267 | 11.7 | -0.42 | 0.127 | -0.591 | -- | -- | -0.0158 | 20.9 | 7.895 | 528 | -- | -- |
| 32.56 | 0.266 | 11.8 | -0.692 | -- | -0.44 | -- | -1.28 | -0.0943 | -- | 8.631 | 1818 | -- | -- |
| 36.91 | 0.285 | 11.8 | -0.56 | 0.0426 | -- | 0.349 | -- | -0.102 | 6.92 | -- | -- | -- | -- |
| 36.98 | 0.285 | 11.8 | -0.556 | 0.0783 | -- | -- | -- | -0.104 | 3.37 | -- | -- | -- | -- |
| 33.14 | 0.268 | 11.8 | -0.451 | -- | -0.359 | -- | -- | -0.087 | -- | 26.38 | 1771 | -- | -- |
| 37.03 | 0.283 | 11.7 | -- | 0.177 | -0.782 | -- | -- | 0.0551 | 20.5 | 7.016 | 567 | -- | -- |
| 37.33 | 0.285 | 11.8 | -0.552 | -- | -- | -- | -- | -0.102 | -- | -- | -- | -- | -- |
| 45.12 | 0.314 | 11.7 | -- | 0.0673 | -- | -- | -- | -0.0423 | 3.38 | -- | -- | -- | -- |
| 37.62 | 0.286 | 11.7 | -- | -- | -0.633 | -- | -- | 0.0532 | -- | 4.177 | 1755 | -- | -- |
| 45.38 | 0.314 | 11.7 | -- | -- | -- | -- | -- | -0.0409 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.27 | temperature | 15 | 30 | > th | dose dependent | rect. | 3 | 17 |
| 3 | 31.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 9 | 31.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 10 | 31.60 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 14 | 31.62 | temperature | 15 | 30 | > th | dose dependent | rect. | 22 | 22 |
| 33 | 31.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 34 | 31.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 35 | 31.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 50 | 31.79 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 70 | 31.83 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 92 | 31.89 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 101 | 31.90 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 22 |
| 116 | 31.92 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 132 | 31.95 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 134 | 31.95 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 2 |
| 135 | 31.95 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 5 |
| 144 | 31.96 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 155 | 31.96 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 164 | 31.98 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 169 | 31.98 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 8 |
| 190 | 31.99 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 206 | 32.00 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 220 | 32.01 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 273 | 32.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 23 |
| 303 | 32.06 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 305 | 32.07 | temperature | 10 | 1440 | > th | dose dependent | sin | 13 | NA |
| 318 | 32.07 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 15 |
| 380 | 32.10 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 436 | 32.12 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 17 |
| 497 | 32.15 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 577 | 32.17 | temperature | 10 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 680 | 32.21 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 7 |