Os08g0109800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Regulator of chromosome condensation/beta-lactamase-inhibitor protein II domain containing protein.
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Os08g0109800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Regulator of chromosome condensation/beta-lactamase-inhibitor protein II domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 242.32 | 0.731 | 5.72 | -1.03 | 0.388 | 0.111 | -1.7 | -4.89 | -0.085 | 10.7 | 998.7 | 6442 | -- | -- |
| 257.92 | 0.748 | 5.62 | -0.864 | 0.38 | -0.647 | -1.54 | -- | 0.129 | 10.4 | 1010 | 14268 | -- | -- |
| 253.89 | 0.742 | 5.73 | -1.1 | 0.411 | 0.131 | -- | -4.97 | -0.0894 | 9.8 | 998.6 | 6432 | -- | -- |
| 268.72 | 0.763 | 5.63 | -0.659 | 0.446 | -0.73 | -- | -- | 0.097 | 9.78 | 1011 | 24114 | -- | -- |
| 264.06 | 0.757 | 5.74 | -1.1 | -- | 0.102 | -- | -5.03 | -0.0918 | -- | 998.5 | 6576 | -- | -- |
| 274.42 | 0.777 | 5.66 | -0.921 | 0.391 | -- | -1.72 | -- | -0.0655 | 10.7 | -- | -- | -- | -- |
| 286.38 | 0.792 | 5.67 | -0.994 | 0.414 | -- | -- | -- | -0.0732 | 9.9 | -- | -- | -- | -- |
| 278.24 | 0.777 | 5.63 | -0.629 | -- | -0.798 | -- | -- | 0.119 | -- | 1011 | 25476 | -- | -- |
| 276.16 | 0.774 | 5.58 | -- | 0.405 | -0.947 | -- | -- | 0.308 | 9.74 | 1011 | 47520 | -- | -- |
| 296.67 | 0.805 | 5.68 | -0.998 | -- | -- | -- | -- | -0.0732 | -- | -- | -- | -- | -- |
| 312.4 | 0.827 | 5.64 | -- | 0.418 | -- | -- | -- | 0.0374 | 10.1 | -- | -- | -- | -- |
| 285.92 | 0.788 | 5.59 | -- | -- | -0.956 | -- | -- | 0.312 | -- | 1011 | 47520 | -- | -- |
| 322.96 | 0.839 | 5.65 | -- | -- | -- | -- | -- | 0.0376 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 239.46 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 8 |
| 5 | 241.17 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 16 |
| 6 | 241.18 | humidity | 90 | 4320 | < th | dose independent | rect. | 23 | 7 |
| 7 | 241.20 | humidity | 90 | 4320 | < th | dose independent | rect. | 23 | 5 |
| 9 | 241.26 | wind | 5 | 4320 | > th | dose dependent | rect. | 17 | 7 |
| 20 | 242.55 | wind | 7 | 4320 | < th | dose independent | rect. | 16 | 8 |
| 24 | 242.80 | wind | 7 | 4320 | > th | dose independent | rect. | 16 | 8 |
| 26 | 242.86 | wind | 7 | 4320 | < th | dose independent | rect. | 16 | 10 |
| 42 | 243.29 | humidity | 90 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 51 | 243.55 | humidity | 90 | 4320 | < th | dose independent | rect. | 23 | 2 |
| 76 | 244.37 | humidity | 90 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 105 | 244.97 | humidity | 80 | 4320 | > th | dose dependent | rect. | 24 | 4 |
| 107 | 245.06 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 110 | 245.14 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 6 | 3 |
| 117 | 245.24 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 17 | 7 |
| 125 | 245.34 | humidity | 90 | 4320 | > th | dose independent | rect. | 23 | 5 |
| 128 | 245.35 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 16 | 10 |
| 131 | 245.39 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 132 | 245.40 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 17 | 13 |
| 149 | 245.44 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 17 | 13 |
| 155 | 245.47 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 18 | 8 |
| 158 | 245.49 | humidity | 80 | 43200 | > th | dose independent | rect. | 22 | 21 |
| 170 | 245.64 | humidity | 90 | 4320 | > th | dose independent | rect. | 23 | 7 |
| 181 | 245.69 | temperature | 25 | 270 | < th | dose independent | sin | 2 | NA |
| 185 | 245.71 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 192 | 245.78 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 195 | 245.80 | atmosphere | 995 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 197 | 245.81 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 17 |
| 210 | 245.93 | temperature | 25 | 270 | > th | dose independent | sin | 3 | NA |
| 235 | 246.00 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 18 |
| 236 | 246.02 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 2 |
| 239 | 246.04 | humidity | 80 | 4320 | > th | dose dependent | rect. | 23 | 7 |
| 260 | 246.16 | humidity | 90 | 4320 | > th | dose independent | rect. | 23 | 2 |
| 262 | 246.17 | atmosphere | 995 | 14400 | < th | dose independent | sin | 11 | NA |
| 265 | 246.18 | atmosphere | 995 | 14400 | > th | dose independent | sin | 11 | NA |
| 297 | 246.30 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 328 | 246.42 | humidity | 50 | 14400 | > th | dose dependent | rect. | 24 | 7 |
| 388 | 246.59 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 20 |
| 394 | 246.61 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 428 | 246.72 | humidity | 90 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 441 | 246.74 | radiation | 40 | 43200 | > th | dose dependent | rect. | 14 | 18 |
| 480 | 246.85 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 485 | 246.87 | wind | 7 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 486 | 246.87 | atmosphere | 995 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 492 | 246.88 | radiation | 40 | 43200 | > th | dose dependent | rect. | 14 | 2 |
| 493 | 246.88 | radiation | 20 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 528 | 246.89 | atmosphere | 995 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 560 | 246.94 | humidity | 80 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 573 | 246.97 | temperature | 25 | 720 | < th | dose independent | rect. | 24 | 12 |
| 592 | 247.00 | atmosphere | 995 | 14400 | > th | dose dependent | rect. | 20 | 3 |
| 596 | 247.01 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 613 | 247.05 | wind | 7 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 619 | 247.05 | atmosphere | 995 | 14400 | > th | dose dependent | rect. | 20 | 16 |
| 620 | 247.06 | atmosphere | 995 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 630 | 247.07 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 8 |
| 632 | 247.07 | atmosphere | 995 | 14400 | > th | dose dependent | rect. | 22 | 14 |
| 640 | 247.08 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 20 | 16 |
| 671 | 247.11 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 16 | 23 |
| 675 | 247.12 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 20 | 3 |
| 713 | 247.16 | humidity | 90 | 14400 | < th | dose dependent | rect. | 23 | 9 |
| 721 | 247.18 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 722 | 247.18 | atmosphere | 995 | 14400 | > th | dose dependent | sin | 6 | NA |
| 723 | 247.18 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 736 | 247.20 | atmosphere | 1015 | 14400 | < th | dose dependent | sin | 6 | NA |
| 828 | 247.30 | humidity | 50 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 916 | 247.39 | wind | 7 | 4320 | < th | dose independent | sin | 15 | NA |
| 975 | 247.44 | wind | 7 | 4320 | > th | dose independent | sin | 15 | NA |