Os08g0109200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Alcohol dehydrogenase superfamily, zinc-containing protein.
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Os08g0109200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Alcohol dehydrogenase superfamily, zinc-containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.44 | 0.232 | 10.5 | -0.515 | 0.817 | -0.258 | -0.0768 | 1.91 | -0.201 | 0.676 | 29.34 | 715 | -- | -- |
| 25.84 | 0.237 | 10.4 | -0.219 | 0.827 | -0.772 | -0.106 | -- | -0.101 | 0.316 | 19.24 | 1001 | -- | -- |
| 24.46 | 0.23 | 10.5 | -0.521 | 0.818 | -0.253 | -- | 1.95 | -0.202 | 0.666 | 29.3 | 730 | -- | -- |
| 25.93 | 0.237 | 10.4 | -0.207 | 0.807 | -0.736 | -- | -- | -0.0971 | 0.462 | 19.36 | 851 | -- | -- |
| 61.4 | 0.365 | 10.5 | -0.608 | -- | -0.772 | -- | 1.72 | -0.291 | -- | 29 | 897 | -- | -- |
| 29.21 | 0.253 | 10.4 | -0.0772 | 0.849 | -- | -0.373 | -- | -0.0495 | 0.42 | -- | -- | -- | -- |
| 29.8 | 0.256 | 10.4 | -0.0631 | 0.851 | -- | -- | -- | -0.0479 | 0.466 | -- | -- | -- | -- |
| 64.28 | 0.373 | 10.4 | -0.275 | -- | -0.822 | -- | -- | -0.216 | -- | 27.3 | 897 | -- | -- |
| 26.74 | 0.241 | 10.4 | -- | 0.816 | -0.712 | -- | -- | -0.0673 | 0.497 | 18.7 | 613 | -- | -- |
| 75.23 | 0.405 | 10.4 | -0.0339 | -- | -- | -- | -- | -0.0338 | -- | -- | -- | -- | -- |
| 29.91 | 0.256 | 10.4 | -- | 0.85 | -- | -- | -- | -0.0409 | 0.462 | -- | -- | -- | -- |
| 66.02 | 0.378 | 10.4 | -- | -- | -0.706 | -- | -- | -0.164 | -- | 27.3 | 893 | -- | -- |
| 75.26 | 0.405 | 10.4 | -- | -- | -- | -- | -- | -0.0301 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.24 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 13 | 17 |
| 5 | 24.26 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 22 |
| 13 | 24.34 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 2 | 22 |
| 14 | 24.34 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 13 | 22 |
| 41 | 24.40 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 16 | 23 |
| 42 | 24.41 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 61 | 24.41 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 19 | 22 |
| 97 | 24.46 | temperature | 30.0 | 720 | < th | dose dependent | no | NA | NA |
| 104 | 24.47 | wind | 9.0 | 1440 | > th | dose dependent | rect. | 1 | 9 |
| 111 | 24.48 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 10 |
| 119 | 24.49 | wind | 9.0 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 130 | 24.49 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 19 |
| 143 | 24.50 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 7 | 23 |
| 157 | 24.52 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 8 |
| 159 | 24.52 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 14 |
| 161 | 24.52 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 19 | 16 |
| 174 | 24.53 | temperature | 10.0 | 720 | > th | dose dependent | no | NA | NA |
| 175 | 24.53 | temperature | 20.0 | 720 | < th | dose dependent | sin | 13 | NA |
| 176 | 24.53 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 5 | NA |
| 192 | 24.53 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 196 | 24.54 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 11 |
| 213 | 24.55 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 19 | 7 |
| 246 | 24.56 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 19 |
| 250 | 24.56 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 10 | 21 |
| 285 | 24.57 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 357 | 24.60 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 435 | 24.64 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 13 | NA |
| 459 | 24.65 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 476 | 24.66 | wind | 9.0 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 497 | 24.66 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 503 | 24.67 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 561 | 24.69 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 590 | 24.72 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 591 | 24.72 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 19 | 7 |
| 621 | 24.74 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 756 | 24.81 | temperature | 20.0 | 720 | > th | dose independent | rect. | 2 | 19 |
| 798 | 24.83 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 817 | 24.84 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 820 | 24.84 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 833 | 24.85 | wind | 7.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 835 | 24.85 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 858 | 24.86 | humidity | 90.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 860 | 24.86 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 867 | 24.86 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 875 | 24.87 | wind | 7.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 876 | 24.87 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 891 | 24.88 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 892 | 24.88 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 900 | 24.88 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 24 | 4 |
| 925 | 24.89 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 5 | 8 |
| 986 | 24.91 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 5 | 8 |