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Os08g0109100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to SAC domain protein 1 (FIG4-like protein AtFIG4).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.0134) R2 : 0.0325
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.111 (0.0283) R2dN8 : 0.042 R2N8 : 0.0325
σ : 0.253
deviance : 29.37
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
14.48 0.179 10.2 -0.254 0.296 -0.285 0.159 -0.00586 0.136 6.76 40.82 994 -- --
14.45 0.177 10.2 -0.252 0.296 -0.286 0.152 -- 0.139 6.74 40.7 959 -- --
14.51 0.177 10.2 -0.261 0.28 -0.295 -- -0.0233 0.129 6.81 41.14 955 -- --
14.49 0.177 10.2 -0.256 0.291 -0.297 -- -- 0.139 6.77 40.7 955 -- --
16.79 0.191 10.2 -0.241 -- -0.463 -- -0.0443 0.17 -- 40.79 865 -- --
17.37 0.195 10.2 -0.305 0.426 -- 0.241 -- 0.0713 7.18 -- -- -- --
17.52 0.196 10.2 -0.3 0.426 -- -- -- 0.0708 7.16 -- -- -- --
16.79 0.191 10.2 -0.236 -- -0.468 -- -- 0.174 -- 40.79 865 -- --
16.11 0.187 10.2 -- 0.254 -0.318 -- -- 0.173 6.83 40.09 955 -- --
27.12 0.243 10.2 -0.292 -- -- -- -- 0.0783 -- -- -- -- --
19.9 0.209 10.2 -- 0.423 -- -- -- 0.104 7.21 -- -- -- --
18.21 0.199 10.2 -- -- -0.474 -- -- 0.215 -- 40.4 912 -- --
29.37 0.253 10.2 -- -- -- -- -- 0.111 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 14.70 radiation 40.0 720 < th dose independent rect. 3 12
2 14.70 radiation 40.0 720 < th dose independent rect. 19 20
4 14.72 radiation 20.0 1440 > th dose dependent rect. 9 1
6 14.73 radiation 40.0 720 < th dose independent rect. 3 21
8 14.82 temperature 25.0 10 > th dose independent rect. 4 5
13 14.85 radiation 40.0 1440 < th dose independent rect. 5 5
18 14.86 radiation 40.0 1440 < th dose independent rect. 16 18
19 14.87 radiation 40.0 1440 < th dose independent rect. 9 1
20 14.87 radiation 40.0 720 < th dose independent rect. 13 1
22 14.87 radiation 40.0 720 < th dose independent rect. 11 4
23 14.87 radiation 40.0 1440 < th dose independent rect. 18 16
28 14.88 radiation 40.0 1440 < th dose independent rect. 24 10
29 14.88 radiation 40.0 1440 < th dose independent rect. 22 12
30 14.88 radiation 40.0 1440 < th dose independent rect. 20 14
32 14.88 radiation 40.0 720 < th dose dependent rect. 19 14
33 14.89 humidity 70.0 1440 > th dose independent rect. 10 1
40 14.90 precipitation 0.1 720 < th dose independent rect. 24 10
43 14.90 precipitation 0.1 720 < th dose dependent rect. 24 10
44 14.91 wind 1.0 270 > th dose independent rect. 4 1
45 14.91 radiation 40.0 1440 > th dose independent rect. 9 1
50 14.92 radiation 40.0 720 < th dose independent rect. 10 14
51 14.92 radiation 20.0 90 < th dose independent rect. 5 19
53 14.92 atmosphere 1005.0 270 > th dose dependent rect. 4 1
54 14.92 wind 5.0 43200 < th dose dependent rect. 4 3
57 14.92 atmosphere 1005.0 270 > th dose dependent rect. 3 4
77 14.93 wind 5.0 43200 < th dose dependent rect. 1 6
82 14.94 wind 1.0 43200 > th dose dependent rect. 4 3
83 14.94 radiation 40.0 90 < th dose dependent rect. 5 19
85 14.95 radiation 40.0 720 < th dose independent rect. 12 19
92 14.96 radiation 40.0 720 < th dose dependent rect. 3 6
94 14.97 radiation 1.0 1440 > th dose dependent rect. 7 3
98 14.98 humidity 80.0 1440 < th dose independent rect. 9 1
103 14.99 wind 3.0 43200 > th dose independent rect. 1 7
105 14.99 radiation 30.0 10 < th dose dependent rect. 6 3
106 14.99 wind 1.0 43200 > th dose dependent rect. 1 6
110 15.00 wind 3.0 43200 < th dose independent rect. 1 7
113 15.00 radiation 20.0 1440 < th dose dependent rect. 7 1
194 15.03 radiation 40.0 1440 > th dose dependent sin 11 NA
195 15.03 humidity 70.0 1440 > th dose dependent rect. 9 1
202 15.03 temperature 10.0 720 > th dose dependent rect. 3 4
208 15.04 wind 3.0 43200 > th dose independent rect. 4 4
209 15.04 wind 3.0 43200 < th dose independent rect. 4 4
214 15.04 radiation 40.0 1440 < th dose dependent rect. 7 3
221 15.04 radiation 20.0 720 < th dose dependent rect. 21 10
223 15.04 radiation 1.0 720 > th dose dependent rect. 15 21
224 15.05 wind 3.0 43200 > th dose independent rect. 5 1
228 15.05 wind 1.0 30 > th dose independent rect. 4 5
231 15.05 humidity 90.0 10 < th dose independent rect. 4 5
233 15.05 radiation 20.0 720 < th dose independent rect. 19 14
269 15.06 wind 7.0 43200 > th dose dependent rect. 12 1
274 15.06 atmosphere 1005.0 30 > th dose dependent rect. 4 5
277 15.07 wind 3.0 43200 < th dose independent rect. 5 1
339 15.08 wind 3.0 43200 > th dose independent rect. 7 1
349 15.08 radiation 40.0 720 < th dose independent rect. 12 10
351 15.08 precipitation 0.1 720 < th dose independent rect. 22 14
372 15.08 precipitation 0.1 720 < th dose dependent rect. 22 14
380 15.09 radiation 20.0 10 < th dose independent rect. 6 3
395 15.09 radiation 40.0 1440 < th dose dependent rect. 24 10
403 15.09 radiation 40.0 720 < th dose dependent rect. 3 21
444 15.11 wind 3.0 43200 < th dose independent rect. 7 1
445 15.11 humidity 80.0 1440 < th dose independent rect. 8 4
446 15.11 radiation 20.0 720 < th dose independent rect. 3 6
450 15.11 temperature 15.0 720 > th dose dependent rect. 4 2
462 15.11 radiation 40.0 90 < th dose dependent rect. 5 10
464 15.11 radiation 40.0 10 < th dose dependent rect. 6 18
473 15.12 radiation 10.0 720 < th dose independent rect. 21 10
509 15.13 radiation 40.0 1440 < th dose dependent rect. 7 1
518 15.13 radiation 20.0 1440 < th dose dependent rect. 24 9
524 15.14 radiation 40.0 1440 > th dose independent sin 11 NA
525 15.14 wind 7.0 43200 > th dose independent rect. 12 1
526 15.14 wind 9.0 43200 < th dose independent rect. 12 1
562 15.14 radiation 40.0 1440 < th dose dependent rect. 9 1
615 15.15 radiation 40.0 1440 < th dose independent sin 11 NA
753 15.19 radiation 40.0 90 < th dose independent rect. 5 19
772 15.19 wind 1.0 43200 < th dose dependent rect. 1 10
790 15.20 radiation 40.0 720 > th dose independent rect. 13 23
809 15.20 precipitation 0.1 14400 > th dose dependent rect. 4 12
844 15.21 precipitation 0.1 14400 > th dose dependent rect. 4 10
876 15.22 radiation 20.0 90 < th dose independent rect. 5 10
878 15.22 precipitation 0.1 14400 > th dose independent rect. 4 12
905 15.22 radiation 40.0 720 < th dose dependent rect. 3 12
909 15.22 radiation 40.0 720 < th dose dependent rect. 19 20
916 15.23 radiation 1.0 4320 < th dose independent rect. 6 6
920 15.23 precipitation 0.1 14400 > th dose independent rect. 4 10
921 15.23 precipitation 0.1 14400 < th dose independent rect. 4 12
922 15.23 radiation 20.0 1440 < th dose independent rect. 16 18
948 15.23 wind 1.0 43200 < th dose dependent rect. 3 9
954 15.23 precipitation 0.1 14400 < th dose dependent rect. 4 12
969 15.24 humidity 50.0 1440 > th dose independent rect. 5 5
975 15.24 precipitation 0.1 14400 < th dose independent rect. 4 10