Os08g0108200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : G-protein, beta subunit family protein.
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Os08g0108200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : G-protein, beta subunit family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.38 | 0.356 | 9.66 | 1.15 | 0.173 | -0.455 | -0.314 | 0.194 | 0.125 | 0.264 | 22.6 | 117 | -- | -- |
| 57.54 | 0.353 | 9.67 | 1.09 | 0.17 | -0.453 | -0.443 | -- | 0.108 | 0.671 | 22.5 | 116 | -- | -- |
| 57.66 | 0.354 | 9.66 | 1.2 | 0.176 | -0.457 | -- | 0.321 | 0.138 | 23.5 | 22.54 | 114 | -- | -- |
| 58.25 | 0.355 | 9.67 | 1.1 | 0.175 | -0.454 | -- | -- | 0.111 | 23.6 | 22.51 | 116 | -- | -- |
| 59.49 | 0.359 | 9.66 | 1.21 | -- | -0.5 | -- | 0.307 | 0.143 | -- | 22.5 | 98 | -- | -- |
| 70.05 | 0.392 | 9.7 | 0.921 | 0.292 | -- | -0.417 | -- | -0.0448 | 0.722 | -- | -- | -- | -- |
| 70.72 | 0.394 | 9.7 | 0.938 | 0.294 | -- | -- | -- | -0.0419 | 0.253 | -- | -- | -- | -- |
| 60.02 | 0.361 | 9.66 | 1.12 | -- | -0.499 | -- | -- | 0.125 | -- | 22.48 | 105 | -- | -- |
| 88.42 | 0.438 | 9.71 | -- | 0.215 | -0.302 | -- | -- | -0.0685 | 0.134 | 22.3 | 68 | -- | -- |
| 76.17 | 0.408 | 9.7 | 0.947 | -- | -- | -- | -- | -0.0374 | -- | -- | -- | -- | -- |
| 93.89 | 0.453 | 9.73 | -- | 0.308 | -- | -- | -- | -0.146 | 0.416 | -- | -- | -- | -- |
| 91.17 | 0.445 | 9.7 | -- | -- | -0.361 | -- | -- | -0.043 | -- | 22.34 | 68 | -- | -- |
| 99.84 | 0.466 | 9.72 | -- | -- | -- | -- | -- | -0.142 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.05 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 12 |
| 3 | 57.51 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 8 |
| 4 | 57.77 | temperature | 25 | 90 | < th | dose dependent | sin | 7 | NA |
| 7 | 57.77 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 10 | 57.86 | temperature | 20 | 90 | > th | dose dependent | sin | 8 | NA |
| 17 | 58.05 | temperature | 25 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 20 | 58.12 | temperature | 20 | 270 | > th | dose dependent | sin | 10 | NA |
| 22 | 58.20 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 34 | 58.36 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 38 | 58.39 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 60 | 58.64 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 77 | 58.80 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 9 |
| 91 | 58.90 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 4 |
| 92 | 58.91 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 15 |
| 107 | 58.99 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 110 | 59.00 | temperature | 20 | 30 | > th | dose independent | rect. | 22 | 14 |
| 113 | 59.03 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 120 | 59.06 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 125 | 59.11 | temperature | 25 | 720 | < th | dose independent | sin | 15 | NA |
| 130 | 59.14 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 10 |
| 137 | 59.16 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 147 | 59.20 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 160 | 59.25 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 162 | 59.26 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 16 |
| 166 | 59.28 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 14 |
| 176 | 59.31 | temperature | 25 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 187 | 59.33 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 202 | 59.40 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 11 |
| 231 | 59.46 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 236 | 59.47 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 238 | 59.48 | temperature | 20 | 30 | > th | dose independent | rect. | 22 | 18 |
| 247 | 59.53 | temperature | 25 | 720 | > th | dose independent | sin | 15 | NA |
| 397 | 59.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 14 |
| 413 | 59.89 | temperature | 20 | 30 | > th | dose independent | rect. | 22 | 16 |
| 503 | 60.07 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 20 |
| 539 | 60.14 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 18 |
| 555 | 60.17 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 21 |
| 619 | 60.30 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 5 |
| 673 | 60.40 | temperature | 20 | 30 | > th | dose independent | rect. | 22 | 20 |
| 705 | 60.46 | temperature | 25 | 270 | < th | dose independent | sin | 11 | NA |
| 892 | 60.80 | temperature | 25 | 720 | > th | dose independent | rect. | 22 | 2 |
| 933 | 60.86 | temperature | 20 | 30 | > th | dose dependent | rect. | 22 | 18 |
| 948 | 60.88 | humidity | 50 | 14400 | < th | dose dependent | rect. | 10 | 2 |
| 954 | 60.89 | temperature | 20 | 90 | > th | dose independent | sin | 6 | NA |
| 959 | 60.90 | radiation | 20 | 14400 | < th | dose independent | rect. | 23 | 7 |
| 989 | 60.95 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 21 |