Os08g0107500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Shwachman-Bodian-Diamond syndrome proteins family protein.
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Os08g0107500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Shwachman-Bodian-Diamond syndrome proteins family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.57 | 0.247 | 12.3 | 0.451 | 0.464 | -0.81 | 0.336 | 0.353 | 0.00766 | 19.7 | 78.7 | 1363 | -- | -- |
| 27.65 | 0.245 | 12.3 | 0.434 | 0.473 | -0.79 | 0.283 | -- | 0.0111 | 19.9 | 78.58 | 1322 | -- | -- |
| 27.75 | 0.245 | 12.3 | 0.458 | 0.472 | -0.785 | -- | 0.296 | 0.0119 | 20.1 | 77.93 | 1316 | -- | -- |
| 27.8 | 0.246 | 12.3 | 0.429 | 0.477 | -0.766 | -- | -- | 0.00435 | 20.1 | 78 | 1305 | -- | -- |
| 39.45 | 0.293 | 12.3 | 0.431 | -- | -0.863 | -- | 0.316 | -0.014 | -- | 79 | 1382 | -- | -- |
| 35.31 | 0.279 | 12.3 | 0.384 | 0.489 | -- | 0.434 | -- | -0.0359 | 19.3 | -- | -- | -- | -- |
| 35.77 | 0.28 | 12.3 | 0.374 | 0.489 | -- | -- | -- | -0.0357 | 19.5 | -- | -- | -- | -- |
| 39.52 | 0.293 | 12.3 | 0.409 | -- | -0.855 | -- | -- | -0.00292 | -- | 78.71 | 1379 | -- | -- |
| 32.35 | 0.265 | 12.3 | -- | 0.47 | -0.747 | -- | -- | -0.0461 | 20.1 | 78.54 | 1319 | -- | -- |
| 48.55 | 0.326 | 12.3 | 0.367 | -- | -- | -- | -- | -0.0434 | -- | -- | -- | -- | -- |
| 39.45 | 0.294 | 12.3 | -- | 0.486 | -- | -- | -- | -0.0774 | 19.5 | -- | -- | -- | -- |
| 43.91 | 0.309 | 12.3 | -- | -- | -0.813 | -- | -- | -0.0502 | -- | 78.47 | 1382 | -- | -- |
| 52.09 | 0.337 | 12.3 | -- | -- | -- | -- | -- | -0.0841 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.70 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 10 |
| 2 | 26.83 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 13 | 27.07 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 17 |
| 18 | 27.18 | humidity | 70 | 720 | > th | dose dependent | sin | 17 | NA |
| 19 | 27.20 | humidity | 60 | 720 | > th | dose dependent | sin | 15 | NA |
| 26 | 27.23 | humidity | 70 | 720 | > th | dose dependent | rect. | 11 | 14 |
| 29 | 27.25 | humidity | 80 | 1440 | < th | dose independent | rect. | 21 | 18 |
| 31 | 27.26 | humidity | 80 | 720 | > th | dose independent | sin | 17 | NA |
| 32 | 27.26 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 17 |
| 36 | 27.27 | humidity | 80 | 720 | > th | dose independent | rect. | 14 | 13 |
| 60 | 27.34 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 17 |
| 75 | 27.38 | humidity | 80 | 1440 | > th | dose independent | rect. | 21 | 19 |
| 185 | 27.63 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 227 | 27.70 | humidity | 80 | 720 | > th | dose independent | rect. | 15 | 7 |
| 265 | 27.77 | humidity | 70 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 277 | 27.80 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 295 | 27.85 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 300 | 27.85 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 22 |
| 325 | 27.89 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 332 | 27.90 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 22 |
| 362 | 27.94 | humidity | 70 | 720 | > th | dose dependent | rect. | 19 | 1 |
| 406 | 28.00 | humidity | 80 | 720 | < th | dose independent | rect. | 10 | 22 |
| 415 | 28.01 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 22 |
| 419 | 28.01 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 455 | 28.08 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 462 | 28.08 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 500 | 28.13 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 538 | 28.17 | humidity | 80 | 1440 | > th | dose independent | no | NA | NA |
| 549 | 28.18 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 614 | 28.24 | humidity | 80 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 651 | 28.27 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 694 | 28.33 | humidity | 80 | 720 | < th | dose independent | rect. | 10 | 18 |
| 746 | 28.38 | humidity | 80 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 749 | 28.38 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 10 |
| 754 | 28.39 | humidity | 80 | 720 | < th | dose independent | sin | 16 | NA |
| 763 | 28.39 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 7 |
| 832 | 28.47 | humidity | 70 | 90 | > th | dose dependent | rect. | 11 | 16 |
| 883 | 28.53 | humidity | 70 | 90 | > th | dose dependent | rect. | 17 | 10 |
| 903 | 28.56 | humidity | 90 | 720 | < th | dose dependent | sin | 13 | NA |
| 923 | 28.59 | humidity | 80 | 720 | < th | dose independent | rect. | 10 | 12 |
| 935 | 28.61 | humidity | 70 | 90 | > th | dose dependent | rect. | 15 | 12 |
| 939 | 28.61 | radiation | 1 | 90 | < th | dose dependent | rect. | 5 | 22 |