Os08g0107000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os08g0107000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 186.16 | 0.641 | 3.38 | -0.0439 | 0.185 | 5.4 | -0.103 | -0.147 | -0.154 | 6.46 | 60.71 | 10 | 16 | 0.976 |
| 186.16 | 0.635 | 3.38 | -0.0437 | 0.185 | 5.39 | -0.102 | -- | -0.154 | 6.46 | 60.79 | 10 | 16 | 0.977 |
| 186.18 | 0.636 | 3.38 | -0.0448 | 0.185 | 5.37 | -- | 0.259 | -0.154 | 6.36 | 59.9 | 10 | 16 | 0.968 |
| 186.18 | 0.636 | 3.38 | -0.0453 | 0.185 | 5.39 | -- | -- | -0.154 | 6.36 | 60.72 | 10 | 16 | 0.975 |
| 187.72 | 0.638 | 3.39 | -0.0372 | -- | 5.35 | -- | 0.438 | -0.156 | -- | 61.11 | 10 | 16 | 0.938 |
| 215.82 | 0.689 | 3.39 | -0.0192 | 0.118 | -- | -0.242 | -- | -0.172 | 7.33 | -- | -- | -- | -- |
| 215.98 | 0.688 | 3.39 | -0.0247 | 0.118 | -- | -- | -- | -0.171 | 7.14 | -- | -- | -- | -- |
| 187.72 | 0.641 | 3.39 | -0.0382 | -- | 5.39 | -- | -- | -0.156 | -- | 60.72 | 10 | 16 | 0.975 |
| 186.23 | 0.636 | 3.38 | -- | 0.185 | 5.39 | -- | -- | -0.149 | 6.38 | 60.6 | 10 | 16 | 0.971 |
| 216.72 | 0.688 | 3.39 | -0.0225 | -- | -- | -- | -- | -0.169 | -- | -- | -- | -- | -- |
| 215.99 | 0.687 | 3.39 | -- | 0.118 | -- | -- | -- | -0.168 | 7.15 | -- | -- | -- | -- |
| 187.76 | 0.64 | 3.39 | -- | -- | 5.39 | -- | -- | -0.151 | -- | 60.72 | 10 | 16 | 0.975 |
| 216.73 | 0.687 | 3.39 | -- | -- | -- | -- | -- | -0.167 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 186.36 | humidity | 60.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 3 | 186.60 | humidity | 60.0 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 6 | 187.27 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 7 | 187.58 | temperature | 30.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 8 | 187.80 | radiation | 10.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 9 | 187.93 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 10 | 189.07 | wind | 5.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 15 | 194.22 | wind | 1.0 | 720 | < th | dose dependent | rect. | 22 | 1 |
| 16 | 194.23 | wind | 7.0 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 17 | 194.57 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 22 | 196.26 | wind | 1.0 | 720 | < th | dose independent | rect. | 22 | 1 |
| 23 | 196.31 | wind | 1.0 | 30 | < th | dose dependent | rect. | 23 | 1 |
| 57 | 198.49 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 63 | 199.05 | wind | 1.0 | 30 | < th | dose dependent | rect. | 9 | 15 |
| 74 | 199.56 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 16 | 15 |
| 98 | 200.49 | wind | 1.0 | 30 | < th | dose dependent | rect. | 14 | 10 |
| 131 | 201.69 | radiation | 20.0 | 10 | < th | dose independent | rect. | 16 | 1 |
| 136 | 202.06 | wind | 1.0 | 30 | < th | dose dependent | rect. | 12 | 12 |
| 139 | 202.22 | wind | 3.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 141 | 202.29 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 168 | 202.51 | temperature | 10.0 | 10 | > th | dose independent | rect. | 16 | 1 |
| 173 | 202.51 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 16 | 1 |
| 174 | 202.51 | temperature | 10.0 | 10 | > th | dose independent | rect. | 17 | 23 |
| 175 | 202.51 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 209 | 204.38 | wind | 9.0 | 10 | < th | dose independent | rect. | 17 | 23 |
| 282 | 205.24 | radiation | 10.0 | 10 | > th | dose independent | rect. | 16 | 15 |
| 283 | 205.26 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 284 | 205.26 | humidity | 50.0 | 30 | < th | dose dependent | rect. | 16 | 20 |
| 344 | 205.94 | wind | 1.0 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 346 | 206.08 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 10 | 1 |
| 348 | 206.10 | atmosphere | 1000.0 | 720 | < th | dose dependent | rect. | 10 | 1 |
| 356 | 206.22 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 16 | 1 |
| 359 | 206.24 | humidity | 50.0 | 90 | > th | dose independent | sin | 6 | NA |
| 402 | 206.62 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 1 |
| 453 | 206.89 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 9 | 1 |
| 454 | 206.96 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 20 | 2 |
| 457 | 207.00 | wind | 1.0 | 30 | < th | dose dependent | sin | 18 | NA |
| 461 | 207.07 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 20 | 2 |
| 464 | 207.08 | humidity | 50.0 | 30 | < th | dose dependent | sin | 14 | NA |
| 468 | 207.09 | humidity | 50.0 | 30 | < th | dose dependent | sin | 20 | NA |
| 478 | 207.11 | humidity | 50.0 | 30 | < th | dose dependent | sin | 17 | NA |
| 489 | 207.19 | humidity | 50.0 | 30 | < th | dose dependent | no | NA | NA |
| 659 | 207.34 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 20 | 1 |
| 690 | 207.58 | humidity | 50.0 | 10 | > th | dose independent | sin | 10 | NA |
| 696 | 207.69 | wind | 1.0 | 30 | < th | dose dependent | rect. | 8 | 2 |
| 701 | 207.76 | humidity | 50.0 | 10 | > th | dose independent | sin | 18 | NA |
| 709 | 207.88 | wind | 1.0 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 730 | 208.01 | humidity | 50.0 | 30 | < th | dose independent | rect. | 16 | 20 |
| 752 | 208.04 | humidity | 50.0 | 10 | > th | dose independent | no | NA | NA |
| 753 | 208.05 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 767 | 208.18 | wind | 9.0 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 776 | 208.31 | temperature | 25.0 | 30 | > th | dose independent | rect. | 9 | 1 |
| 817 | 208.45 | wind | 5.0 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 822 | 208.47 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 7 | 15 |
| 823 | 208.49 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 827 | 208.52 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 828 | 208.53 | wind | 5.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 829 | 208.53 | wind | 1.0 | 30 | < th | dose independent | rect. | 9 | 15 |
| 835 | 208.56 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 17 | 23 |
| 843 | 208.59 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 10 | 1 |
| 846 | 208.60 | humidity | 50.0 | 10 | > th | dose independent | rect. | 3 | 23 |
| 849 | 208.61 | humidity | 50.0 | 30 | > th | dose independent | sin | 1 | NA |
| 850 | 208.62 | wind | 1.0 | 30 | < th | dose independent | rect. | 23 | 1 |
| 857 | 208.65 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 18 | 5 |
| 869 | 208.71 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 18 | 1 |
| 871 | 208.71 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 872 | 208.71 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 18 | 1 |
| 879 | 208.73 | wind | 3.0 | 30 | < th | dose dependent | rect. | 22 | 12 |
| 895 | 208.83 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 8 | 15 |
| 899 | 208.84 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 4 | 5 |
| 992 | 209.15 | wind | 5.0 | 4320 | < th | dose independent | rect. | 22 | 19 |