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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0106300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.89 (0.0574) R2 : 0.313
β1 : -3.14 (0.312) R2dD : 0.358 R2D : 0.088
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.41 (0.254) R2dE : 0.156 R2E : 0.14
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -6.46 (1.14) R2dD*E : 0.111 R2D*E : -0.212
γ1 : -0.121 (0.133) R2dN8 : 0.00222 R2N8 : -0.0178
σ : 1.06
deviance : 513.94
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.86
memory length : 4547
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17.7
open length of G : 12.8

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
488.57 1.04 3.89 -3.21 0.385 2.32 2.66 -6.82 -0.138 5.02 0.8907 4546 17.8 12.9
525.8 1.07 3.89 -2.01 0.28 2.33 2.43 -- 0.098 4.95 0.8323 4535 18 12.8
505.73 1.05 3.89 -3.18 0.412 2.35 -- -6.57 -0.111 4.99 0.8712 4553 17.7 12.9
536.41 1.08 3.88 -1.89 0.289 2.26 -- -- 0.0912 4.67 0.8301 4547 18 12.6
513.94 1.06 3.89 -3.14 -- 2.41 -- -6.46 -0.121 -- 0.86 4547 17.7 12.8
602.05 1.15 3.78 -1.84 0.527 -- 2.32 -- 0.401 5.11 -- -- -- --
615.11 1.16 3.78 -1.84 0.555 -- -- -- 0.391 5.79 -- -- -- --
530.45 1.07 3.89 -2.16 -- 2.44 -- -- 0.0238 -- 0.3052 3109 17.9 13
568.94 1.11 3.88 -- 0.654 2.43 -- -- 0.48 5.32 0.8523 4563 17.8 11.4
631.09 1.17 3.79 -1.82 -- -- -- -- 0.404 -- -- -- -- --
704.04 1.24 3.74 -- 0.527 -- -- -- 0.596 5.95 -- -- -- --
555.02 1.1 3.82 -- -- 2.55 -- -- 0.539 -- 1.074 5398 17.8 11.5
718.43 1.25 3.75 -- -- -- -- -- 0.606 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 502.33 humidity 90 43200 > th dose dependent rect. 5 5
2 502.38 humidity 90 43200 > th dose dependent rect. 4 7
5 502.73 humidity 90 43200 > th dose independent rect. 4 7
7 502.85 humidity 90 43200 > th dose independent rect. 3 9
11 503.12 radiation 1 4320 < th dose dependent rect. 2 3
13 503.33 radiation 1 4320 < th dose dependent rect. 4 1
17 503.78 humidity 90 43200 > th dose dependent rect. 8 1
26 504.42 radiation 1 43200 > th dose independent rect. 5 4
27 504.43 radiation 1 43200 < th dose independent rect. 5 4
30 504.49 radiation 1 43200 > th dose independent rect. 18 15
31 504.50 radiation 1 43200 < th dose independent rect. 18 14
35 504.56 radiation 1 43200 > th dose independent rect. 18 1
47 504.63 radiation 1 43200 < th dose independent rect. 21 12
49 504.64 radiation 1 43200 < th dose independent rect. 24 9
70 504.69 humidity 90 43200 < th dose independent rect. 20 1
100 505.06 humidity 90 43200 > th dose dependent sin 2 NA
103 505.08 humidity 90 43200 > th dose dependent rect. 3 20
152 505.48 radiation 1 43200 < th dose independent sin 9 NA
153 505.48 wind 5 43200 < th dose independent rect. 12 4
158 505.52 radiation 1 43200 > th dose independent sin 8 NA
160 505.52 wind 5 43200 < th dose independent rect. 11 9
166 505.64 wind 1 43200 > th dose dependent rect. 13 1
168 505.68 humidity 90 43200 < th dose independent rect. 5 6
171 505.69 wind 5 43200 > th dose independent rect. 11 9
173 505.70 wind 5 43200 > th dose independent rect. 12 5
176 505.75 radiation 1 4320 < th dose dependent rect. 21 9
178 505.78 radiation 1 4320 < th dose dependent rect. 24 6
187 505.84 radiation 1 43200 > th dose independent rect. 6 1
188 505.84 radiation 1 43200 < th dose independent rect. 6 1
191 505.86 humidity 90 43200 > th dose independent rect. 3 20
205 506.05 wind 9 43200 < th dose dependent rect. 13 1
217 506.19 humidity 90 43200 > th dose independent sin 3 NA
221 506.23 humidity 90 43200 < th dose independent rect. 3 10
223 506.24 wind 1 43200 > th dose dependent rect. 12 3
231 506.32 wind 7 43200 < th dose dependent rect. 11 4
236 506.38 humidity 90 43200 < th dose independent rect. 3 20
268 506.50 humidity 90 43200 > th dose independent rect. 22 1
271 506.50 wind 3 43200 > th dose dependent rect. 11 6
364 507.08 humidity 90 43200 > th dose independent rect. 7 3
414 507.44 humidity 90 43200 > th dose independent rect. 20 1
426 507.59 radiation 1 43200 < th dose dependent rect. 5 3
454 507.74 radiation 1 1440 < th dose dependent rect. 18 9
472 507.84 humidity 90 43200 > th dose dependent rect. 19 4
476 507.86 humidity 90 43200 < th dose independent sin 2 NA
478 507.87 humidity 90 43200 < th dose independent rect. 8 2
488 507.90 radiation 1 43200 < th dose dependent rect. 20 12
491 507.91 radiation 1 43200 < th dose dependent rect. 2 6
492 507.91 radiation 1 43200 < th dose dependent rect. 24 8
535 508.04 radiation 1 1440 < th dose dependent rect. 18 1
545 508.14 radiation 20 14400 < th dose independent rect. 5 1
546 508.15 radiation 1 4320 > th dose independent rect. 18 13
599 508.35 humidity 90 43200 < th dose independent rect. 22 1
634 508.55 radiation 1 43200 < th dose dependent sin 9 NA
712 508.93 radiation 1 43200 > th dose independent rect. 5 14
724 508.94 radiation 1 43200 < th dose independent rect. 5 20
729 508.95 radiation 1 43200 < th dose independent rect. 5 14
736 508.95 radiation 1 1440 < th dose dependent rect. 18 4
745 508.99 humidity 90 43200 > th dose independent rect. 19 4
792 509.10 radiation 1 43200 < th dose independent rect. 18 9
804 509.13 radiation 1 43200 > th dose independent no NA NA
805 509.13 radiation 1 43200 < th dose independent no NA NA
821 509.13 radiation 1 43200 < th dose independent rect. 24 19
860 509.13 radiation 1 43200 < th dose independent rect. 2 23
906 509.21 wind 5 43200 < th dose independent sin 19 NA
923 509.24 radiation 1 43200 < th dose independent rect. 18 1
934 509.28 radiation 1 43200 < th dose independent rect. 18 4