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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0106000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.95 (0.0833) R2 : 0.31
β1 : -5.26 (0.509) R2dD : 0.617 R2D : -0.013
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.84 (0.191) R2dE : 0.179 R2E : 0.0224
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.67 (1.18) R2dD*E : 0.13 R2D*E : -0.326
γ1 : -0.812 (0.193) R2dN8 : 0.0542 R2N8 : -0.0906
σ : 1.35
deviance : 835.24
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.9
memory length : 5336
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17.2
open length of G : 1.07

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
818.24 1.34 4.95 -5.13 0.458 1.74 1.81 -5.26 -0.799 5.85 25 5328 17 1.13
863.98 1.37 4.8 -4 0.418 1.96 1.74 -- -0.688 5.62 22.88 9761 16.6 1.39
821.75 1.34 4.94 -5.22 0.487 1.89 -- -5.31 -0.823 8.15 24.93 5307 17.2 1.05
852.85 1.36 4.84 -4.05 0.553 2.42 -- -- -0.53 6.37 22.88 9688 16 1.12
835.24 1.35 4.95 -5.26 -- 1.84 -- -5.67 -0.812 -- 24.9 5336 17.2 1.07
985.47 1.47 4.66 -2.66 0.619 -- 1.77 -- 0.118 5.18 -- -- -- --
993.08 1.48 4.66 -2.65 0.636 -- -- -- 0.11 5.55 -- -- -- --
864.24 1.37 4.84 -4.35 -- 2.8 -- -- -0.636 -- 22.87 9820 15.7 1.33
1142.73 1.57 4.77 -- 0.551 1.02 -- -- -0.349 5.13 27.3 8250 16.3 1.89
1014.13 1.49 4.67 -2.63 -- -- -- -- 0.125 -- -- -- -- --
1178.78 1.61 4.6 -- 0.594 -- -- -- 0.405 5.74 -- -- -- --
1143.31 1.57 4.71 -- -- 1.15 -- -- -0.0297 -- 27.3 8250 16.5 1.71
1197.09 1.61 4.61 -- -- -- -- -- 0.417 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 809.53 wind 5 43200 > th dose independent rect. 12 10
2 810.04 wind 5 43200 < th dose independent rect. 12 10
15 811.15 wind 3 43200 > th dose dependent rect. 12 3
32 812.41 humidity 90 43200 > th dose dependent rect. 21 2
43 813.07 wind 3 43200 > th dose dependent rect. 11 5
45 813.21 wind 5 43200 > th dose independent rect. 12 4
50 813.34 wind 5 43200 > th dose independent rect. 11 6
52 813.36 humidity 80 43200 < th dose independent rect. 21 1
54 813.51 wind 5 43200 < th dose independent rect. 12 3
59 813.66 wind 3 43200 > th dose dependent rect. 11 11
60 813.72 wind 5 43200 < th dose independent rect. 11 6
63 813.83 wind 5 43200 < th dose independent sin 19 NA
78 814.36 wind 5 43200 > th dose independent sin 19 NA
107 815.31 wind 3 43200 > th dose dependent rect. 13 1
115 815.53 humidity 90 43200 > th dose independent rect. 22 1
122 815.68 wind 9 43200 < th dose dependent rect. 11 4
137 816.14 wind 5 43200 > th dose dependent rect. 14 6
206 818.19 radiation 1 43200 > th dose independent rect. 5 3
207 818.20 radiation 1 43200 < th dose independent rect. 5 3
211 818.37 wind 3 43200 > th dose dependent sin 19 NA
224 818.68 temperature 20 43200 > th dose dependent rect. 7 1
237 819.06 temperature 20 43200 > th dose dependent rect. 6 3
245 819.20 radiation 1 43200 > th dose independent rect. 18 1
273 819.69 radiation 1 43200 > th dose independent rect. 18 14
277 819.75 wind 5 43200 < th dose dependent rect. 20 1
284 819.82 radiation 1 43200 < th dose independent rect. 21 11
287 819.84 radiation 1 43200 < th dose independent rect. 24 8
290 819.86 radiation 1 43200 < th dose independent rect. 2 6
309 820.05 humidity 90 43200 > th dose dependent rect. 3 21
330 820.61 humidity 90 43200 > th dose independent rect. 18 5
372 821.03 humidity 90 43200 > th dose dependent rect. 7 20
387 821.24 temperature 25 43200 > th dose dependent rect. 11 1
389 821.25 humidity 90 43200 < th dose independent rect. 18 5
400 821.38 radiation 40 43200 < th dose independent rect. 9 1
471 822.37 humidity 90 43200 > th dose dependent sin 3 NA
476 822.44 wind 1 43200 > th dose dependent rect. 20 1
477 822.45 temperature 25 43200 < th dose independent rect. 8 1
480 822.46 temperature 25 43200 > th dose dependent rect. 13 1
490 822.59 wind 1 43200 < th dose dependent rect. 24 2
496 822.63 humidity 90 43200 > th dose dependent rect. 4 7
498 822.66 humidity 90 43200 > th dose independent rect. 2 21
501 822.66 humidity 90 43200 > th dose dependent rect. 15 22
513 822.78 temperature 25 43200 < th dose independent sin 5 NA
520 822.87 temperature 25 43200 > th dose independent rect. 8 1
522 822.89 temperature 25 43200 < th dose independent rect. 22 17
532 822.94 radiation 1 43200 > th dose independent sin 9 NA
548 822.98 temperature 25 43200 > th dose independent rect. 22 17
549 822.98 humidity 90 43200 > th dose dependent rect. 3 9
551 822.99 temperature 25 43200 > th dose independent sin 5 NA
571 823.06 temperature 25 43200 < th dose independent rect. 24 14
602 823.18 radiation 1 43200 < th dose dependent rect. 5 1
608 823.21 radiation 1 43200 < th dose independent sin 9 NA
618 823.27 temperature 25 43200 < th dose independent rect. 1 12
620 823.29 humidity 90 43200 > th dose dependent no NA NA
622 823.29 humidity 90 43200 > th dose dependent rect. 2 17
639 823.37 temperature 25 43200 < th dose independent rect. 5 7
655 823.43 temperature 25 43200 > th dose independent rect. 5 7
657 823.43 temperature 20 43200 > th dose dependent sin 7 NA
705 823.64 humidity 90 43200 > th dose dependent rect. 19 23
719 823.69 temperature 25 43200 > th dose independent rect. 3 10
744 823.79 temperature 20 43200 > th dose dependent rect. 21 1
748 823.81 radiation 40 43200 > th dose independent rect. 10 1
754 823.83 humidity 90 43200 > th dose independent rect. 2 11
868 824.28 humidity 90 43200 > th dose independent rect. 3 8
875 824.31 humidity 90 43200 > th dose dependent sin 18 NA
899 824.39 radiation 1 43200 < th dose dependent rect. 18 12
913 824.42 humidity 90 43200 > th dose dependent rect. 11 23
930 824.47 radiation 20 43200 < th dose independent rect. 8 1