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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0105400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cytochrome P450 71C4 (EC 1.14.-.-).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0196) R2 : 0.0545
β1 : -0.686 (0.0741) R2dD : 0.16 R2D : -0.218
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.53 (0.224) R2dE : 2.13 R2E : -2.18
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -55.5 (1.77) R2dD*E : 2.37 R2D*E : -2.18
γ1 : 0.0252 (0.0419) R2dN8 : 0.00156 R2N8 : -0.035
σ : 0.254
deviance : 29.34
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 74.44
memory length : 33
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19
open length of G : 12.5

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
29.13 0.254 3 -0.338 0.0576 2.74 0.142 -27.7 0.026 13.6 74.79 31 18.9 4.21
61.31 0.365 2.97 -0.0168 0.0647 1.02 0.312 -- 0.00713 10.7 77.88 23 19.6 4.23
29.19 0.252 3 -0.322 0.0625 2.76 -- -27.8 0.0278 14.1 74.72 31 18.9 4.18
61.88 0.366 2.96 0.0129 0.0476 0.961 -- -- 0.0282 12.8 78.56 20 19.7 2
29.34 0.254 3.04 -0.686 -- 5.53 -- -55.5 0.0252 -- 74.44 33 19 12.5
63.82 0.375 2.98 -0.0312 0.0476 -- -0.672 -- 0.00206 19.7 -- -- -- --
64.92 0.377 2.98 -0.0119 0.0761 -- -- -- 0.00249 16.6 -- -- -- --
60.35 0.362 2.97 0.0327 -- 1.05 -- -- 0.0168 -- 78.99 17 20 1.18
60.99 0.364 2.96 -- 0.084 0.999 -- -- 0.0137 11.4 83.21 67 19.9 0.886
65.23 0.377 2.97 -0.0148 -- -- -- -- 0.000487 -- -- -- -- --
64.92 0.377 2.97 -- 0.0763 -- -- -- 0.00381 16.6 -- -- -- --
60.17 0.361 2.97 -- -- 1.3 -- -- 0.0176 -- 77.97 18 20 1.3
65.23 0.377 2.97 -- -- -- -- -- 0.00213 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 36.82 humidity 80.0 30 < th dose dependent rect. 18 2
57 44.51 radiation 20.0 270 > th dose dependent rect. 16 1
88 46.23 humidity 60.0 270 < th dose independent rect. 16 1
90 46.69 humidity 60.0 270 < th dose independent rect. 16 3
116 48.00 humidity 80.0 10 < th dose independent rect. 19 1
118 48.01 humidity 60.0 270 < th dose dependent rect. 16 1
126 48.44 humidity 60.0 270 < th dose dependent rect. 16 4
143 49.25 atmosphere 1005.0 90 < th dose independent rect. 18 1
212 53.99 atmosphere 1005.0 270 < th dose dependent rect. 16 1
216 54.17 atmosphere 1010.0 90 < th dose dependent rect. 18 2
223 54.37 wind 3.0 30 > th dose independent rect. 19 1
294 55.46 temperature 25.0 90 < th dose independent rect. 18 1
317 55.65 temperature 20.0 90 > th dose independent rect. 18 2
320 55.68 temperature 30.0 10 < th dose dependent rect. 18 3
352 56.02 temperature 20.0 10 > th dose independent rect. 19 1
359 56.12 wind 7.0 90 < th dose independent rect. 18 2
363 56.13 wind 9.0 270 > th dose dependent rect. 18 1
366 56.13 radiation 1.0 270 > th dose dependent rect. 16 13
367 56.14 radiation 1.0 270 > th dose dependent rect. 16 3
381 56.19 wind 1.0 30 > th dose dependent rect. 18 3
387 56.33 temperature 20.0 10 > th dose independent rect. 18 3
389 56.34 radiation 20.0 270 > th dose independent rect. 16 1
479 56.74 radiation 1.0 90 < th dose dependent rect. 18 2
482 56.81 humidity 70.0 90 > th dose independent rect. 18 2
499 56.87 precipitation 0.1 90 < th dose independent rect. 18 2
500 56.87 precipitation 0.1 90 < th dose dependent rect. 18 2
506 56.92 wind 9.0 270 > th dose independent rect. 18 1
514 56.97 temperature 10.0 90 > th dose independent rect. 18 2
517 56.97 atmosphere 995.0 90 > th dose independent rect. 18 2
521 56.97 radiation 20.0 90 < th dose independent rect. 18 2
528 56.97 temperature 10.0 90 > th dose independent rect. 20 22
530 56.98 precipitation 0.1 90 < th dose independent rect. 20 22
531 56.98 radiation 30.0 90 < th dose dependent rect. 18 2
534 56.98 precipitation 0.1 90 < th dose dependent rect. 20 22
537 57.00 radiation 1.0 90 < th dose independent rect. 18 2
543 57.03 atmosphere 995.0 90 > th dose independent rect. 20 22
561 57.17 precipitation 0.1 10 < th dose independent rect. 18 3
562 57.17 precipitation 0.1 10 < th dose dependent rect. 18 3
570 57.21 radiation 1.0 4320 < th dose dependent rect. 19 2
584 57.26 precipitation 0.1 10 < th dose independent rect. 19 1
585 57.26 precipitation 0.1 10 < th dose dependent rect. 19 1
591 57.28 wind 9.0 90 < th dose independent rect. 20 22
616 57.30 humidity 70.0 10 > th dose independent rect. 18 3
621 57.31 humidity 80.0 90 < th dose independent rect. 18 9
638 57.35 atmosphere 1000.0 10 > th dose independent rect. 18 3
644 57.36 temperature 10.0 10 > th dose independent rect. 18 3
646 57.36 humidity 50.0 10 > th dose independent rect. 18 3
651 57.36 radiation 20.0 10 < th dose independent rect. 18 3
654 57.36 temperature 10.0 10 > th dose independent rect. 21 21
668 57.38 radiation 40.0 10 < th dose dependent rect. 18 3
673 57.39 humidity 70.0 10 > th dose independent rect. 19 1
708 57.42 temperature 10.0 1440 > th dose independent rect. 19 3
711 57.42 temperature 30.0 1440 < th dose independent rect. 19 3
715 57.42 humidity 50.0 1440 > th dose independent rect. 19 3
717 57.42 atmosphere 995.0 1440 > th dose independent rect. 19 3
720 57.42 radiation 1.0 1440 < th dose independent rect. 19 3
742 57.42 temperature 10.0 1440 > th dose independent rect. 22 21
746 57.42 radiation 1.0 10 < th dose dependent rect. 18 3
765 57.45 atmosphere 995.0 10 > th dose independent rect. 21 21
772 57.48 atmosphere 1000.0 10 > th dose independent rect. 19 1
776 57.49 temperature 10.0 10 > th dose independent rect. 19 1
779 57.49 humidity 50.0 10 > th dose independent rect. 19 1
784 57.49 radiation 1.0 10 < th dose independent rect. 19 1
791 57.49 temperature 10.0 10 > th dose independent rect. 20 23
792 57.49 radiation 1.0 10 < th dose dependent rect. 19 1
856 57.56 temperature 10.0 1440 > th dose independent rect. 20 1
860 57.56 temperature 30.0 1440 < th dose independent rect. 20 1
866 57.56 humidity 50.0 1440 > th dose independent rect. 20 1
874 57.56 atmosphere 995.0 1440 > th dose independent rect. 20 1
885 57.56 radiation 1.0 1440 < th dose independent rect. 20 1
908 57.56 temperature 10.0 1440 > th dose independent rect. 21 23
911 57.56 atmosphere 995.0 10 > th dose independent rect. 20 23