FiT-DB / Search/ Help/ Sample detail

Os08g0104700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Chaperonin Cpn60/TCP-1 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.48 (0.0344) R2 : 0.45
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.14 (0.103) R2dC : 0.194 R2C : 0.337
β3 : -0.964 (0.114) R2dE : 0.113 R2E : 0.256
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00566 (0.0724) R2dN8 : 9.02e-06 R2N8 : -0.000932
σ : 0.645
deviance : 191.84
__
_____
C
peak time of C : 18.3
E
wheather : temperature
threshold : 29.23
memory length : 245
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
188.74 0.645 7.51 -0.313 1.18 -1.28 1.32 3.51 -0.00444 18.1 29.7 267 -- --
188.77 0.64 7.49 0.0285 1.16 -0.912 1.15 -- -0.0115 18.2 29.2 245 -- --
191.93 0.645 7.51 -0.263 1.18 -1.24 -- 2.37 -0.0215 18.2 29.5 249 -- --
191.84 0.645 7.48 0.0131 1.14 -0.957 -- -- -0.003 18.3 29.24 245 -- --
236.35 0.716 7.48 -0.335 -- -1.76 -- 2.44 -0.136 -- 28.7 406 -- --
212.22 0.683 7.48 0.184 1.57 -- 1.61 -- 0.047 17.8 -- -- -- --
218.54 0.692 7.48 0.173 1.58 -- -- -- 0.0537 17.8 -- -- -- --
233.45 0.712 7.48 -0.143 -- -1.66 -- -- -0.13 -- 28.7 405 -- --
191.84 0.645 7.48 -- 1.14 -0.964 -- -- -0.00566 18.3 29.23 245 -- --
348.54 0.872 7.45 0.124 -- -- -- -- 0.0163 -- -- -- -- --
219.33 0.693 7.48 -- 1.58 -- -- -- 0.0343 17.8 -- -- -- --
233.92 0.712 7.48 -- -- -1.64 -- -- -0.112 -- 28.69 405 -- --
348.95 0.872 7.45 -- -- -- -- -- 0.00257 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 175.30 atmosphere 1015.0 10 < th dose dependent rect. 12 20
5 176.03 temperature 30.0 270 < th dose independent rect. 15 21
7 177.30 atmosphere 995.0 30 > th dose dependent rect. 18 18
14 177.78 atmosphere 1005.0 270 > th dose independent rect. 16 18
16 177.94 temperature 20.0 90 > th dose independent rect. 23 9
18 178.09 temperature 20.0 10 > th dose independent rect. 12 21
19 178.12 temperature 20.0 90 > th dose independent rect. 12 20
20 178.23 temperature 15.0 30 > th dose dependent rect. 12 20
33 179.13 temperature 30.0 90 < th dose independent rect. 17 19
57 180.79 temperature 30.0 270 < th dose independent rect. 6 15
59 180.99 temperature 15.0 30 > th dose dependent rect. 12 6
61 181.07 atmosphere 1005.0 30 < th dose independent rect. 13 19
76 181.35 temperature 20.0 10 > th dose independent rect. 23 9
77 181.37 radiation 1.0 30 > th dose independent rect. 12 7
92 181.81 temperature 10.0 1440 > th dose independent rect. 13 6
97 181.81 temperature 10.0 1440 > th dose independent rect. 19 18
100 181.81 atmosphere 995.0 1440 > th dose independent rect. 19 18
102 181.88 atmosphere 1015.0 90 < th dose dependent rect. 23 9
128 182.73 humidity 50.0 270 > th dose independent rect. 15 21
129 182.75 temperature 10.0 90 > th dose dependent rect. 23 9
134 182.91 temperature 15.0 270 > th dose dependent rect. 12 3
142 182.97 temperature 15.0 10 > th dose dependent rect. 12 16
165 183.32 temperature 10.0 90 > th dose dependent rect. 12 15
172 183.45 wind 1.0 30 > th dose independent rect. 12 6
181 183.65 temperature 10.0 270 > th dose dependent rect. 10 21
184 183.70 wind 9.0 30 < th dose independent rect. 12 6
195 184.00 precipitation 0.1 30 < th dose independent rect. 18 18
196 184.00 precipitation 0.1 30 < th dose dependent rect. 18 18
198 184.05 wind 1.0 270 > th dose independent rect. 12 3
201 184.10 radiation 20.0 270 < th dose independent rect. 21 10
203 184.16 temperature 10.0 270 > th dose independent rect. 21 10
204 184.16 temperature 30.0 270 < th dose independent rect. 21 10
205 184.16 humidity 50.0 270 > th dose independent rect. 21 10
207 184.16 atmosphere 995.0 270 > th dose independent rect. 21 10
210 184.16 temperature 10.0 270 > th dose independent rect. 7 14
213 184.17 radiation 40.0 270 < th dose dependent rect. 21 10
226 184.22 precipitation 0.1 30 < th dose independent rect. 12 6
228 184.22 precipitation 0.1 30 < th dose dependent rect. 12 6
243 184.26 atmosphere 995.0 30 > th dose independent rect. 18 18
245 184.27 temperature 10.0 30 > th dose independent rect. 12 6
247 184.27 atmosphere 1015.0 30 < th dose independent rect. 12 6
248 184.27 temperature 10.0 30 > th dose independent rect. 18 18
258 184.36 wind 9.0 270 < th dose independent rect. 21 10
306 185.01 wind 9.0 30 < th dose independent rect. 18 18
340 185.29 precipitation 0.1 270 < th dose independent rect. 7 14
341 185.29 precipitation 0.1 270 < th dose dependent rect. 7 14
373 185.60 precipitation 0.1 270 < th dose independent rect. 15 21
374 185.60 precipitation 0.1 270 < th dose dependent rect. 15 21
378 185.62 temperature 10.0 270 > th dose dependent rect. 21 10
379 185.63 temperature 20.0 270 > th dose independent rect. 12 3
384 185.74 radiation 1.0 30 > th dose independent rect. 12 20
385 185.74 atmosphere 1015.0 270 < th dose dependent rect. 21 10
388 185.76 temperature 15.0 30 > th dose dependent rect. 12 8
394 185.81 wind 9.0 270 < th dose independent rect. 12 3
398 185.87 atmosphere 1015.0 30 < th dose dependent rect. 12 6
403 185.94 humidity 90.0 30 < th dose independent rect. 12 6
404 185.94 humidity 90.0 30 < th dose independent rect. 18 18
417 186.02 atmosphere 1005.0 90 > th dose dependent rect. 17 6
423 186.08 precipitation 0.1 270 < th dose independent rect. 12 3
424 186.08 precipitation 0.1 270 < th dose dependent rect. 12 3
428 186.11 atmosphere 1015.0 270 < th dose independent rect. 7 14
437 186.16 temperature 10.0 270 > th dose independent rect. 12 3
439 186.16 atmosphere 1015.0 270 < th dose independent rect. 12 3
440 186.16 temperature 10.0 270 > th dose independent rect. 15 21
446 186.18 wind 9.0 270 < th dose independent rect. 7 14
463 186.30 wind 1.0 270 > th dose independent rect. 15 21
466 186.32 atmosphere 995.0 270 > th dose independent rect. 15 21
478 186.40 temperature 20.0 10 > th dose independent rect. 1 7
489 186.49 humidity 50.0 270 > th dose independent rect. 12 3
495 186.51 atmosphere 995.0 90 > th dose independent rect. 8 15
499 186.53 temperature 25.0 30 > th dose dependent rect. 12 8
501 186.56 atmosphere 995.0 30 > th dose independent rect. 12 6
503 186.58 atmosphere 1015.0 10 < th dose dependent rect. 24 9
505 186.59 humidity 50.0 270 > th dose dependent rect. 21 10
512 186.66 precipitation 0.1 270 < th dose independent rect. 21 10
513 186.66 precipitation 0.1 270 < th dose dependent rect. 21 10
516 186.67 temperature 30.0 90 < th dose independent rect. 23 9
517 186.67 humidity 50.0 90 > th dose independent rect. 23 9
519 186.67 atmosphere 995.0 90 > th dose independent rect. 23 9
524 186.70 wind 9.0 90 < th dose independent rect. 23 9
532 186.75 radiation 40.0 90 < th dose independent rect. 23 9
533 186.75 temperature 20.0 10 > th dose independent rect. 12 16
552 186.85 atmosphere 995.0 270 > th dose independent rect. 12 3
553 186.85 wind 9.0 270 < th dose independent rect. 15 21
556 186.89 atmosphere 1015.0 90 < th dose independent rect. 23 9
560 186.93 humidity 90.0 270 < th dose independent rect. 12 3
561 186.93 wind 5.0 90 < th dose independent rect. 8 15
572 187.04 atmosphere 1005.0 270 > th dose independent rect. 16 6
579 187.09 wind 1.0 90 > th dose independent rect. 17 19
590 187.18 atmosphere 1015.0 270 < th dose dependent rect. 12 3
599 187.21 humidity 50.0 90 > th dose dependent rect. 23 9
605 187.26 humidity 70.0 90 < th dose independent rect. 12 7
610 187.27 radiation 40.0 270 < th dose independent rect. 7 14
613 187.28 wind 9.0 10 < th dose independent rect. 12 21
619 187.29 temperature 10.0 270 > th dose dependent rect. 21 20
643 187.38 humidity 70.0 90 < th dose independent rect. 12 19
697 187.65 temperature 15.0 30 > th dose dependent rect. 12 10
702 187.70 radiation 1.0 10 > th dose independent rect. 9 3
710 187.74 temperature 10.0 270 > th dose dependent rect. 22 18
714 187.76 wind 1.0 10 > th dose independent rect. 9 3
724 187.81 wind 1.0 270 > th dose dependent rect. 12 3
743 187.86 humidity 90.0 30 < th dose dependent rect. 12 8
759 187.92 temperature 10.0 10 > th dose independent rect. 9 3
761 187.92 atmosphere 995.0 10 > th dose independent rect. 9 3
762 187.92 atmosphere 1015.0 10 < th dose independent rect. 9 3
763 187.92 precipitation 0.1 10 < th dose independent rect. 9 3
765 187.92 precipitation 0.1 10 < th dose dependent rect. 9 3
768 187.96 wind 9.0 10 < th dose independent rect. 9 3
781 187.99 temperature 25.0 30 > th dose dependent rect. 12 10
800 188.03 radiation 1.0 270 > th dose independent rect. 12 3
821 188.06 temperature 10.0 1440 > th dose independent rect. 9 4
824 188.06 atmosphere 995.0 1440 > th dose independent rect. 9 4
825 188.06 temperature 10.0 1440 > th dose independent rect. 13 20
832 188.09 wind 1.0 30 > th dose dependent rect. 12 6
853 188.18 precipitation 0.1 90 < th dose independent rect. 23 9
855 188.18 precipitation 0.1 90 < th dose dependent rect. 23 9
856 188.20 atmosphere 1005.0 270 > th dose independent rect. 16 11
861 188.23 atmosphere 1015.0 270 < th dose independent rect. 21 10
887 188.29 wind 1.0 30 > th dose independent rect. 12 20
888 188.29 radiation 1.0 90 > th dose dependent rect. 12 20
889 188.30 humidity 70.0 270 > th dose independent rect. 7 14
919 188.44 humidity 90.0 10 < th dose independent rect. 9 3
934 188.47 atmosphere 1015.0 30 < th dose independent rect. 18 18
939 188.49 temperature 30.0 90 < th dose independent rect. 8 4
947 188.50 wind 9.0 90 < th dose dependent rect. 8 15
958 188.55 atmosphere 1015.0 10 < th dose independent rect. 12 21