Os08g0104400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0104400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 184.9 | 0.639 | 2.91 | 0.387 | 0.131 | 14.2 | -0.173 | 29.5 | 0.0932 | 4.16 | 1015 | 1443 | -- | -- |
| 199.83 | 0.658 | 2.8 | 0.332 | 0.0183 | 0.753 | -0.415 | -- | 0.122 | 22.5 | 1010 | 1582 | -- | -- |
| 184.61 | 0.633 | 2.91 | 0.41 | 0.128 | 14.4 | -- | 29.8 | 0.0929 | 4.49 | 1015 | 1479 | -- | -- |
| 198.23 | 0.656 | 2.8 | 0.301 | 0.195 | 0.668 | -- | -- | 0.147 | 4.63 | 1011 | 2675 | -- | -- |
| 185.45 | 0.634 | 2.91 | 0.415 | -- | 15 | -- | 31.4 | 0.102 | -- | 1015 | 1476 | -- | -- |
| 204.04 | 0.67 | 2.81 | 0.255 | 0.134 | -- | -0.19 | -- | 0.0774 | 3.96 | -- | -- | -- | -- |
| 204.11 | 0.669 | 2.81 | 0.257 | 0.138 | -- | -- | -- | 0.0784 | 4.64 | -- | -- | -- | -- |
| 199.6 | 0.658 | 2.8 | 0.35 | -- | 0.66 | -- | -- | 0.144 | -- | 1011 | 2559 | -- | -- |
| 201.15 | 0.661 | 2.81 | -- | 0.172 | 0.626 | -- | -- | 0.0954 | 4.43 | 1011 | 2562 | -- | -- |
| 205.12 | 0.669 | 2.81 | 0.263 | -- | -- | -- | -- | 0.082 | -- | -- | -- | -- | -- |
| 205.85 | 0.671 | 2.82 | -- | 0.143 | -- | -- | -- | 0.0497 | 4.59 | -- | -- | -- | -- |
| 202.67 | 0.663 | 2.81 | -- | -- | 0.592 | -- | -- | 0.0961 | -- | 1011 | 2614 | -- | -- |
| 206.94 | 0.671 | 2.82 | -- | -- | -- | -- | -- | 0.0529 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 178.04 | wind | 5.0 | 90 | > th | dose independent | rect. | 24 | 10 |
| 2 | 178.11 | wind | 3.0 | 90 | > th | dose dependent | rect. | 24 | 10 |
| 3 | 178.54 | wind | 5.0 | 90 | > th | dose dependent | rect. | 22 | 12 |
| 5 | 179.55 | wind | 7.0 | 90 | > th | dose independent | rect. | 22 | 11 |
| 8 | 179.93 | wind | 5.0 | 90 | > th | dose dependent | rect. | 1 | 8 |
| 19 | 182.87 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 23 | 13 |
| 23 | 183.17 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 23 | 13 |
| 25 | 183.44 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 23 | 13 |
| 31 | 183.83 | atmosphere | 1015.0 | 1440 | > th | dose dependent | sin | 6 | NA |
| 36 | 184.40 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 22 | 17 |
| 48 | 184.69 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 64 | 184.78 | wind | 7.0 | 90 | > th | dose independent | rect. | 22 | 7 |
| 72 | 184.85 | wind | 7.0 | 90 | > th | dose dependent | rect. | 22 | 3 |
| 73 | 184.86 | wind | 7.0 | 90 | > th | dose dependent | rect. | 22 | 7 |
| 77 | 184.87 | wind | 7.0 | 90 | > th | dose dependent | rect. | 22 | 5 |
| 80 | 184.91 | atmosphere | 1010.0 | 10 | > th | dose dependent | rect. | 24 | 10 |
| 82 | 184.93 | atmosphere | 1015.0 | 1440 | > th | dose dependent | no | NA | NA |
| 83 | 184.93 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 10 | 17 |
| 145 | 184.96 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 10 | 14 |
| 200 | 185.47 | atmosphere | 1015.0 | 1440 | > th | dose dependent | sin | 20 | NA |
| 203 | 185.69 | atmosphere | 1015.0 | 1440 | > th | dose independent | sin | 6 | NA |
| 210 | 186.18 | atmosphere | 1015.0 | 1440 | < th | dose independent | sin | 6 | NA |
| 214 | 186.42 | atmosphere | 1010.0 | 270 | > th | dose dependent | rect. | 24 | 6 |
| 217 | 186.45 | wind | 3.0 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 219 | 186.51 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 22 | 17 |
| 236 | 186.62 | wind | 5.0 | 90 | > th | dose independent | rect. | 8 | 1 |
| 238 | 186.66 | atmosphere | 1010.0 | 90 | > th | dose dependent | rect. | 24 | 9 |
| 246 | 186.87 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 22 | 18 |
| 254 | 187.03 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 6 | 1 |
| 257 | 187.13 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 12 | 3 |
| 261 | 187.21 | atmosphere | 1010.0 | 720 | > th | dose dependent | rect. | 22 | 5 |
| 279 | 187.56 | atmosphere | 1010.0 | 270 | > th | dose independent | rect. | 24 | 6 |
| 325 | 187.85 | atmosphere | 1010.0 | 720 | > th | dose dependent | rect. | 22 | 3 |
| 343 | 188.08 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 358 | 188.08 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 4 | 8 |
| 359 | 188.08 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 379 | 188.10 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 384 | 188.14 | atmosphere | 1010.0 | 270 | > th | dose dependent | rect. | 6 | 1 |
| 400 | 188.16 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 6 | 6 |
| 401 | 188.16 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 409 | 188.22 | wind | 5.0 | 10 | > th | dose independent | rect. | 9 | 1 |
| 422 | 188.26 | atmosphere | 1010.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 437 | 188.29 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 10 | 14 |
| 455 | 188.31 | atmosphere | 1015.0 | 1440 | > th | dose independent | no | NA | NA |
| 533 | 188.37 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 1 | 10 |
| 581 | 188.68 | atmosphere | 1010.0 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 586 | 188.68 | atmosphere | 1010.0 | 1440 | > th | dose dependent | rect. | 10 | 5 |
| 601 | 188.72 | humidity | 60.0 | 4320 | < th | dose dependent | rect. | 19 | 14 |
| 617 | 188.94 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 19 | 14 |
| 641 | 189.03 | atmosphere | 1015.0 | 1440 | > th | dose independent | sin | 20 | NA |
| 667 | 189.15 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 14 | 23 |
| 669 | 189.17 | wind | 3.0 | 10 | > th | dose dependent | rect. | 1 | 3 |
| 681 | 189.18 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 3 | 21 |
| 691 | 189.21 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 10 | 14 |
| 693 | 189.21 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 6 | 18 |
| 694 | 189.21 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 708 | 189.22 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 10 | 21 |
| 718 | 189.23 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 10 | 19 |
| 722 | 189.23 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 6 | 23 |
| 726 | 189.24 | atmosphere | 1015.0 | 1440 | < th | dose independent | no | NA | NA |
| 730 | 189.24 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 799 | 189.33 | wind | 5.0 | 90 | > th | dose independent | rect. | 1 | 1 |
| 801 | 189.33 | temperature | 25.0 | 10 | < th | dose independent | rect. | 10 | 1 |
| 804 | 189.33 | wind | 5.0 | 90 | > th | dose dependent | rect. | 1 | 1 |
| 808 | 189.34 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 22 | 1 |
| 809 | 189.34 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 22 | 1 |
| 814 | 189.37 | radiation | 20.0 | 10 | < th | dose independent | rect. | 10 | 1 |
| 868 | 189.55 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 19 | 14 |
| 984 | 189.76 | humidity | 50.0 | 4320 | < th | dose dependent | sin | 6 | NA |
| 988 | 189.77 | atmosphere | 1015.0 | 1440 | < th | dose independent | sin | 21 | NA |