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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0103900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NAM-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.65 (0.0769) R2 : 0.417
β1 : 5.24 (0.44) R2dD : 0.794 R2D : -0.024
β2 : 0.78 (0.143) R2dC : 0.038 R2C : 0.0346
β3 : -2.02 (0.234) R2dE : 0.14 R2E : -0.0456
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 9.35 (1.43) R2dD*E : 0.228 R2D*E : -0.38
γ1 : -0.116 (0.161) R2dN8 : 0.00178 R2N8 : 0.00329
σ : 1.09
deviance : 550.23
__
_____
C
peak time of C : 9.64
E
wheather : temperature
threshold : 26.42
memory length : 4235
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
550.52 1.1 4.65 5.2 0.774 -1.97 -0.106 9.07 -0.0868 9.7 26.3 4240 -- --
575.37 1.12 4.83 4.45 0.781 -2.19 -0.26 -- -0.0963 9.43 21.4 21189 -- --
550.23 1.09 4.65 5.24 0.78 -2.02 -- 9.35 -0.116 9.64 26.42 4235 -- --
574.43 1.12 4.83 4.28 0.823 -2.08 -- -- -0.119 9.89 21.39 21250 -- --
581.31 1.12 4.65 5.28 -- -2.08 -- 9.4 -0.038 -- 26.34 3854 -- --
645.48 1.19 5.01 2.31 0.862 -- -0.373 -- -0.941 10.2 -- -- -- --
645.97 1.19 5.01 2.29 0.867 -- -- -- -0.942 10.1 -- -- -- --
614.82 1.15 4.84 4.33 -- -2.15 -- -- -0.0935 -- 21.38 21154 -- --
783.34 1.31 5.06 -- 0.903 -0.142 -- -- -1.17 10.3 26.71 9450 -- --
691.31 1.23 5.03 2.28 -- -- -- -- -0.943 -- -- -- -- --
784.64 1.31 5.07 -- 0.859 -- -- -- -1.2 9.86 -- -- -- --
822.42 1.34 5.06 -- -- -0.389 -- -- -1.08 -- 26.8 7947 -- --
828.75 1.34 5.09 -- -- -- -- -- -1.2 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 522.98 wind 1 43200 < th dose dependent rect. 19 1
2 525.35 wind 1 43200 < th dose independent rect. 19 1
3 532.39 wind 3 14400 < th dose independent rect. 8 1
4 532.91 wind 9 43200 > th dose dependent rect. 16 1
5 533.60 wind 1 14400 < th dose dependent rect. 19 11
6 535.21 wind 1 14400 < th dose dependent rect. 21 9
8 535.43 radiation 10 43200 < th dose dependent rect. 7 1
9 535.61 wind 3 14400 > th dose independent rect. 8 1
12 536.78 radiation 10 43200 < th dose dependent rect. 6 3
15 537.32 radiation 10 43200 < th dose dependent rect. 2 7
17 537.33 radiation 10 43200 < th dose dependent rect. 20 13
21 537.35 radiation 10 43200 < th dose dependent rect. 22 11
39 538.26 radiation 1 43200 > th dose dependent rect. 7 1
53 538.57 humidity 50 43200 > th dose independent rect. 17 1
72 538.94 radiation 40 43200 < th dose independent rect. 13 2
74 539.04 humidity 50 43200 < th dose independent rect. 17 1
86 539.14 radiation 10 43200 < th dose dependent sin 8 NA
87 539.15 wind 1 43200 > th dose independent rect. 19 1
89 539.21 radiation 40 43200 > th dose dependent rect. 13 1
96 539.53 wind 1 43200 > th dose independent rect. 22 4
145 540.06 radiation 10 43200 < th dose independent rect. 7 4
148 540.20 humidity 50 43200 > th dose independent rect. 17 7
165 540.38 humidity 50 43200 > th dose independent rect. 17 10
180 540.46 radiation 10 43200 < th dose independent rect. 7 1
223 540.92 wind 1 43200 < th dose independent rect. 19 7
248 541.02 radiation 10 43200 < th dose independent rect. 6 6
308 541.32 radiation 40 43200 < th dose independent rect. 13 16
309 541.33 radiation 40 43200 < th dose independent rect. 13 18
310 541.33 temperature 20 1440 > th dose dependent rect. 22 5
314 541.34 radiation 40 43200 < th dose independent rect. 13 11
317 541.35 radiation 40 43200 < th dose independent rect. 13 9
326 541.36 radiation 40 43200 < th dose independent rect. 13 14
328 541.36 radiation 1 4320 < th dose dependent rect. 19 10
339 541.44 humidity 50 43200 < th dose independent rect. 17 5
348 541.52 humidity 50 43200 > th dose independent rect. 16 18
351 541.56 humidity 80 43200 > th dose independent rect. 6 2
361 541.74 wind 1 43200 < th dose independent rect. 22 4
369 541.94 humidity 50 43200 < th dose independent rect. 16 19
373 542.03 radiation 10 43200 < th dose independent rect. 2 10
379 542.04 radiation 10 43200 < th dose independent rect. 23 13
432 542.43 radiation 1 43200 > th dose dependent sin 10 NA
467 542.55 radiation 30 43200 > th dose dependent sin 15 NA
470 542.56 radiation 30 43200 > th dose dependent rect. 11 21
474 542.61 wind 1 43200 > th dose independent rect. 20 6
477 542.63 radiation 30 43200 < th dose independent rect. 12 21
479 542.64 radiation 40 43200 > th dose dependent rect. 11 4
539 542.82 temperature 20 1440 > th dose dependent rect. 22 1
590 543.01 wind 1 43200 < th dose dependent rect. 19 7
595 543.03 wind 5 14400 < th dose dependent rect. 8 1
635 543.18 radiation 10 43200 > th dose independent rect. 6 2
707 543.39 radiation 1 43200 > th dose dependent rect. 16 20
732 543.48 radiation 10 43200 < th dose independent sin 5 NA
923 543.86 radiation 20 43200 < th dose independent rect. 15 22
935 543.89 radiation 20 43200 < th dose independent rect. 9 22
963 543.95 radiation 40 43200 < th dose independent sin 15 NA
966 543.95 radiation 40 43200 > th dose dependent rect. 11 1