Os08g0103400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0103400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.47 | 0.327 | 9.08 | 0.735 | 0.581 | 0.739 | -0.486 | -0.092 | 0.106 | 15.8 | 30.01 | 275 | -- | -- |
| 48.48 | 0.324 | 9.08 | 0.719 | 0.579 | 0.739 | -0.465 | -- | 0.103 | 15.8 | 29.9 | 284 | -- | -- |
| 49.03 | 0.326 | 9.08 | 0.688 | 0.586 | 0.744 | -- | 0.204 | 0.0969 | 15.6 | 29.91 | 261 | -- | -- |
| 49.09 | 0.326 | 9.08 | 0.716 | 0.584 | 0.753 | -- | -- | 0.101 | 15.6 | 30.26 | 265 | -- | -- |
| 56.55 | 0.35 | 9.07 | 0.832 | -- | 0.648 | -- | -0.608 | 0.0898 | -- | 55.3 | 1128 | -- | -- |
| 55.65 | 0.35 | 9.11 | 0.537 | 0.365 | -- | -0.493 | -- | -0.0438 | 15.5 | -- | -- | -- | -- |
| 56.35 | 0.352 | 9.11 | 0.528 | 0.361 | -- | -- | -- | -0.0469 | 15.1 | -- | -- | -- | -- |
| 56.87 | 0.351 | 9.09 | 0.704 | -- | 0.641 | -- | -- | 0.0558 | -- | 162.2 | 1121 | -- | -- |
| 61.06 | 0.364 | 9.11 | -- | 0.459 | 0.451 | -- | -- | -0.0224 | 15.5 | 30.7 | 266 | -- | -- |
| 63.77 | 0.373 | 9.11 | 0.513 | -- | -- | -- | -- | -0.0563 | -- | -- | -- | -- | -- |
| 63.7 | 0.373 | 9.13 | -- | 0.351 | -- | -- | -- | -0.106 | 15.1 | -- | -- | -- | -- |
| 68.18 | 0.385 | 9.11 | -- | -- | 0.372 | -- | -- | -0.0438 | -- | 29.7 | 1093 | -- | -- |
| 70.71 | 0.392 | 9.13 | -- | -- | -- | -- | -- | -0.113 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.27 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 8 |
| 2 | 40.61 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 8 |
| 14 | 41.90 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 20 |
| 17 | 42.00 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 18 |
| 27 | 42.29 | temperature | 20 | 270 | > th | dose independent | rect. | 9 | 18 |
| 31 | 42.42 | temperature | 20 | 90 | > th | dose independent | rect. | 11 | 18 |
| 40 | 42.62 | temperature | 20 | 10 | > th | dose independent | rect. | 10 | 19 |
| 46 | 42.84 | temperature | 20 | 10 | > th | dose independent | rect. | 12 | 17 |
| 60 | 43.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 16 |
| 72 | 43.23 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 3 |
| 90 | 43.46 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 3 |
| 147 | 44.12 | temperature | 20 | 10 | > th | dose independent | rect. | 14 | 15 |
| 201 | 44.61 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 21 | 8 |
| 225 | 44.94 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 17 |
| 230 | 45.00 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 4 |
| 260 | 45.27 | radiation | 1 | 10 | < th | dose independent | sin | 6 | NA |
| 285 | 45.40 | radiation | 1 | 10 | > th | dose independent | sin | 6 | NA |
| 315 | 45.57 | radiation | 1 | 10 | < th | dose dependent | sin | 6 | NA |
| 354 | 45.81 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 21 | 6 |
| 417 | 46.15 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 23 | 6 |
| 461 | 46.39 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 22 |
| 474 | 46.44 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 21 | 8 |
| 568 | 46.81 | radiation | 1 | 10 | < th | dose independent | rect. | 24 | 14 |
| 571 | 46.81 | temperature | 25 | 270 | < th | dose dependent | sin | 13 | NA |
| 591 | 46.87 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 14 | 8 |
| 607 | 46.91 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 12 | 17 |
| 619 | 46.95 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 624 | 46.96 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 3 |
| 651 | 47.03 | radiation | 1 | 10 | < th | dose independent | rect. | 24 | 12 |
| 658 | 47.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 22 |
| 676 | 47.10 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 18 |
| 682 | 47.12 | radiation | 1 | 10 | < th | dose independent | rect. | 24 | 6 |
| 683 | 47.12 | radiation | 1 | 10 | < th | dose independent | rect. | 24 | 8 |
| 711 | 47.18 | radiation | 40 | 90 | < th | dose independent | rect. | 5 | 6 |
| 719 | 47.19 | humidity | 80 | 90 | > th | dose independent | rect. | 24 | 5 |
| 728 | 47.20 | humidity | 80 | 10 | > th | dose independent | rect. | 24 | 5 |
| 731 | 47.20 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 19 |
| 735 | 47.20 | radiation | 1 | 10 | < th | dose dependent | rect. | 24 | 14 |
| 747 | 47.23 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 16 |
| 760 | 47.26 | temperature | 10 | 270 | > th | dose dependent | sin | 10 | NA |
| 775 | 47.30 | atmosphere | 1015 | 90 | < th | dose independent | rect. | 9 | 20 |
| 799 | 47.36 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 12 | 17 |
| 811 | 47.37 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 20 |
| 827 | 47.40 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 23 | 6 |
| 832 | 47.41 | radiation | 1 | 30 | < th | dose independent | rect. | 21 | 17 |
| 837 | 47.41 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 18 | 15 |
| 842 | 47.42 | radiation | 1 | 10 | < th | dose dependent | rect. | 24 | 12 |
| 849 | 47.43 | wind | 3 | 10 | < th | dose dependent | rect. | 21 | 8 |
| 864 | 47.45 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 5 | 19 |
| 868 | 47.46 | temperature | 20 | 720 | < th | dose independent | rect. | 12 | 12 |
| 905 | 47.50 | temperature | 20 | 270 | < th | dose independent | rect. | 15 | 16 |
| 907 | 47.50 | radiation | 1 | 10 | < th | dose dependent | rect. | 24 | 6 |
| 916 | 47.51 | radiation | 1 | 10 | < th | dose dependent | rect. | 24 | 8 |
| 931 | 47.53 | wind | 5 | 90 | < th | dose independent | rect. | 5 | 4 |
| 936 | 47.54 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 6 |
| 948 | 47.55 | humidity | 60 | 30 | > th | dose dependent | rect. | 24 | 5 |
| 976 | 47.58 | radiation | 1 | 90 | < th | dose dependent | rect. | 21 | 9 |
| 979 | 47.59 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 5 | 16 |
| 985 | 47.60 | radiation | 1 | 90 | > th | dose independent | rect. | 4 | 5 |