Os08g0100300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os08g0100300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.29 | 0.383 | 7.82 | -0.891 | 1.07 | -0.759 | 0.821 | -2.26 | 0.427 | 3.24 | 76.54 | 6081 | -- | -- |
| 73.35 | 0.399 | 7.82 | -0.873 | 1.03 | -0.876 | 0.926 | -- | 0.439 | 3.24 | 77 | 6112 | -- | -- |
| 68.43 | 0.385 | 7.82 | -0.91 | 1.07 | -0.728 | -- | -2.35 | 0.429 | 3.23 | 77 | 6113 | -- | -- |
| 76.16 | 0.406 | 7.82 | -0.889 | 1.04 | -0.844 | -- | -- | 0.436 | 3.26 | 77 | 6106 | -- | -- |
| 99.52 | 0.467 | 7.85 | -0.775 | -- | -1.4 | -- | -0.787 | 0.363 | -- | 83 | 6186 | -- | -- |
| 83.55 | 0.429 | 7.83 | -0.84 | 1.08 | -- | 0.813 | -- | 0.404 | 3.32 | -- | -- | -- | -- |
| 85.65 | 0.433 | 7.83 | -0.856 | 1.08 | -- | -- | -- | 0.399 | 3.33 | -- | -- | -- | -- |
| 100.59 | 0.469 | 7.84 | -0.773 | -- | -1.42 | -- | -- | 0.362 | -- | 83 | 6186 | -- | -- |
| 83.7 | 0.426 | 7.83 | -- | 1.1 | -1.09 | -- | -- | 0.39 | 3.22 | 52 | 4395 | -- | -- |
| 152.01 | 0.576 | 7.83 | -0.81 | -- | -- | -- | -- | 0.428 | -- | -- | -- | -- | -- |
| 104.95 | 0.479 | 7.81 | -- | 1.07 | -- | -- | -- | 0.494 | 3.33 | -- | -- | -- | -- |
| 116.33 | 0.504 | 7.82 | -- | -- | -1.44 | -- | -- | 0.446 | -- | 83 | 6186 | -- | -- |
| 169.3 | 0.607 | 7.81 | -- | -- | -- | -- | -- | 0.518 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.18 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 6 | 67.80 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 11 | 6 |
| 7 | 67.80 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 9 | 9 |
| 8 | 67.81 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 16 | 23 |
| 27 | 67.85 | humidity | 60.0 | 14400 | < th | dose dependent | sin | 23 | NA |
| 75 | 67.89 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 11 | 23 |
| 79 | 67.91 | humidity | 60.0 | 14400 | < th | dose dependent | no | NA | NA |
| 200 | 68.04 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 237 | 68.15 | humidity | 60.0 | 14400 | < th | dose independent | sin | 8 | NA |
| 285 | 68.48 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 8 | 4 |
| 287 | 68.49 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 20 | 16 |
| 294 | 68.50 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 22 | 14 |
| 298 | 68.52 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 6 | 4 |
| 327 | 68.64 | humidity | 60.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 328 | 68.65 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 9 | 3 |
| 329 | 68.65 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 8 | 5 |
| 360 | 68.76 | humidity | 50.0 | 14400 | > th | dose independent | sin | 15 | NA |
| 377 | 68.83 | humidity | 70.0 | 14400 | < th | dose dependent | sin | 8 | NA |
| 394 | 68.87 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 395 | 68.89 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 15 |
| 396 | 68.89 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 15 | 21 |
| 397 | 68.89 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 15 |
| 401 | 68.91 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 15 |
| 412 | 68.98 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 13 | 10 |
| 414 | 68.98 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 13 |
| 415 | 68.98 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 13 |
| 416 | 68.99 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 417 | 68.99 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 13 | 8 |
| 428 | 69.00 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 13 |
| 490 | 69.27 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 2 | NA |
| 491 | 69.27 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 2 | NA |
| 493 | 69.27 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 2 | NA |
| 503 | 69.35 | humidity | 50.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 506 | 69.36 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 1 | 17 |
| 508 | 69.36 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 1 | 17 |
| 514 | 69.38 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 1 | 17 |
| 532 | 69.41 | wind | 3.0 | 14400 | < th | dose independent | rect. | 3 | 3 |
| 542 | 69.43 | wind | 3.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 546 | 69.44 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 3 | 5 |
| 563 | 69.47 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 570 | 69.51 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 585 | 69.52 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 2 | NA |
| 588 | 69.54 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 653 | 69.64 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 744 | 69.77 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 13 |
| 760 | 69.82 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 779 | 69.83 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 851 | 70.01 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 856 | 70.02 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 24 | 19 |
| 926 | 70.12 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 934 | 70.12 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 3 |
| 958 | 70.15 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 961 | 70.15 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 5 |