Os07g0696100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os07g0696100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.2 | 0.385 | 7.31 | -0.301 | 0.665 | -0.779 | 1.13 | -2.55 | -0.0185 | 1.15 | 25.8 | 23 | -- | -- |
| 75.51 | 0.408 | 7.35 | -0.715 | 0.617 | -0.58 | 0.247 | -- | -0.0994 | 1.04 | 25.8 | 23 | -- | -- |
| 70.1 | 0.39 | 7.31 | -0.431 | 0.59 | -0.757 | -- | -1.99 | -0.0325 | 1.32 | 25.2 | 185 | -- | -- |
| 75.65 | 0.405 | 7.35 | -0.726 | 0.637 | -0.586 | -- | -- | -0.104 | 1.09 | 26.4 | 11 | -- | -- |
| 82.45 | 0.423 | 7.29 | -0.267 | -- | -0.712 | -- | -2.46 | 0.00931 | -- | 26.58 | 966 | -- | -- |
| 80.6 | 0.421 | 7.32 | -0.581 | 0.483 | -- | 0.238 | -- | 0.0242 | 0.86 | -- | -- | -- | -- |
| 80.84 | 0.421 | 7.32 | -0.59 | 0.482 | -- | -- | -- | 0.0229 | 0.889 | -- | -- | -- | -- |
| 89.71 | 0.441 | 7.34 | -0.738 | -- | -0.588 | -- | -- | -0.0648 | -- | 42.6 | 960 | -- | -- |
| 88.39 | 0.44 | 7.32 | -- | 0.553 | -0.313 | -- | -- | 0.0283 | 0.976 | 26.4 | 11 | -- | -- |
| 95.34 | 0.456 | 7.31 | -0.572 | -- | -- | -- | -- | 0.032 | -- | -- | -- | -- | -- |
| 90 | 0.444 | 7.31 | -- | 0.473 | -- | -- | -- | 0.0886 | 0.834 | -- | -- | -- | -- |
| 100.32 | 0.466 | 7.3 | -- | -- | 1.23 | -- | -- | 0.106 | -- | 15.8 | 9 | -- | -- |
| 103.97 | 0.476 | 7.3 | -- | -- | -- | -- | -- | 0.0954 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.11 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 4 | 66.59 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 6 | 66.68 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 10 | 21 |
| 12 | 66.86 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 15 | 66.91 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 23 | 67.08 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 24 | 67.08 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 29 | 67.15 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 21 |
| 36 | 67.26 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 53 | 67.45 | temperature | 25.0 | 30 | < th | dose dependent | no | NA | NA |
| 55 | 67.45 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 58 | 67.46 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 60 | 67.46 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 62 | 67.47 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 63 | 67.47 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 65 | 67.48 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 66 | 67.48 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 77 | 67.62 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 16 | 18 |
| 92 | 67.69 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 10 | 13 |
| 144 | 67.99 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 170 | 68.08 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 171 | 68.08 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 16 | 6 |
| 177 | 68.11 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 187 | 68.16 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 195 | 68.17 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 201 | 68.19 | wind | 5.0 | 1440 | > th | dose dependent | rect. | 24 | 10 |
| 226 | 68.25 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 239 | 68.28 | temperature | 25.0 | 720 | < th | dose dependent | sin | 19 | NA |
| 275 | 68.40 | wind | 5.0 | 1440 | > th | dose independent | rect. | 20 | 17 |
| 276 | 68.40 | temperature | 30.0 | 270 | < th | dose dependent | sin | 11 | NA |
| 307 | 68.49 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 324 | 68.58 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 329 | 68.60 | wind | 5.0 | 1440 | < th | dose independent | rect. | 20 | 17 |
| 332 | 68.62 | wind | 5.0 | 1440 | > th | dose independent | rect. | 21 | 14 |
| 348 | 68.68 | temperature | 20.0 | 90 | > th | dose dependent | sin | 9 | NA |
| 352 | 68.70 | wind | 5.0 | 1440 | > th | dose independent | rect. | 24 | 11 |
| 386 | 68.81 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 394 | 68.83 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 21 | 10 |
| 439 | 68.92 | temperature | 10.0 | 270 | > th | dose dependent | sin | 11 | NA |
| 491 | 69.03 | wind | 5.0 | 1440 | < th | dose independent | rect. | 24 | 11 |
| 495 | 69.04 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 501 | 69.05 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 506 | 69.07 | wind | 5.0 | 1440 | > th | dose independent | sin | 7 | NA |
| 524 | 69.11 | wind | 5.0 | 1440 | > th | dose dependent | sin | 8 | NA |
| 602 | 69.28 | wind | 5.0 | 1440 | < th | dose independent | sin | 7 | NA |
| 614 | 69.31 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 18 | 15 |
| 631 | 69.34 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 15 | 22 |
| 653 | 69.40 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 17 | 18 |
| 683 | 69.47 | wind | 3.0 | 1440 | > th | dose dependent | rect. | 8 | 2 |
| 699 | 69.51 | wind | 5.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 717 | 69.56 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 13 | 8 |
| 725 | 69.59 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 6 |
| 727 | 69.59 | wind | 5.0 | 1440 | > th | dose independent | rect. | 17 | 20 |
| 735 | 69.60 | wind | 5.0 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 753 | 69.64 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 13 | 6 |
| 770 | 69.68 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 776 | 69.68 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 14 | 5 |
| 805 | 69.69 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 839 | 69.72 | wind | 5.0 | 1440 | < th | dose independent | rect. | 17 | 20 |
| 840 | 69.72 | temperature | 25.0 | 270 | < th | dose independent | rect. | 11 | 20 |
| 854 | 69.76 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 876 | 69.76 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 13 |
| 919 | 69.80 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 3 |
| 935 | 69.84 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 965 | 69.85 | wind | 5.0 | 1440 | < th | dose independent | rect. | 8 | 3 |
| 999 | 69.88 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 10 |