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Os07g0695700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.89 (0.0355) R2 : 0.569
β1 : 1.44 (0.133) R2dD : 0.126 R2D : 0.154
β2 : 1.42 (0.0915) R2dC : 0.23 R2C : 0.249
β3 : 1.9 (0.183) R2dE : 0.119 R2E : 0.196
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.3 (0.0783) R2dN8 : 0.0208 R2N8 : 0.0224
σ : 0.656
deviance : 198.21
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C
peak time of C : 6.43
E
wheather : radiation
threshold : 1.055
memory length : 1452
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
195.21 0.656 5.88 1.4 1.43 1.84 1.14 -0.28 0.31 6.69 1.01 1438 -- --
195.29 0.651 5.88 1.43 1.43 1.88 1.13 -- 0.312 6.68 1.01 1438 -- --
198.34 0.656 5.89 1.43 1.43 1.87 -- -0.23 0.305 6.52 1.02 1443 -- --
198.21 0.656 5.89 1.44 1.42 1.9 -- -- 0.3 6.43 1.055 1452 -- --
302.86 0.811 5.9 1.42 -- 2.04 -- -0.267 0.328 -- 1.07 1461 -- --
241.79 0.729 5.83 1.81 1.46 -- 1.15 -- 0.553 6.67 -- -- -- --
245.13 0.733 5.83 1.83 1.46 -- -- -- 0.549 6.61 -- -- -- --
302.5 0.81 5.92 1.47 -- 2.07 -- -- 0.324 -- 1.055 1463 -- --
248.11 0.734 5.94 -- 1.43 2.61 -- -- 0.0778 6.2 0.86 1457 -- --
356.93 0.883 5.86 1.86 -- -- -- -- 0.579 -- -- -- -- --
333.04 0.854 5.87 -- 1.49 -- -- -- 0.346 6.54 -- -- -- --
353.28 0.875 5.93 -- -- 2.65 -- -- 0.113 -- 0.5254 1461 -- --
448.32 0.988 5.9 -- -- -- -- -- 0.372 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 190.11 wind 7.0 43200 > th dose dependent rect. 14 8
2 190.13 wind 7.0 43200 > th dose independent rect. 17 1
3 190.34 wind 7.0 43200 < th dose independent rect. 17 1
4 190.50 wind 7.0 43200 > th dose dependent rect. 13 10
6 190.62 wind 9.0 43200 < th dose independent rect. 14 9
8 190.81 wind 7.0 43200 > th dose dependent rect. 14 5
9 190.91 wind 9.0 43200 > th dose independent rect. 14 9
13 191.25 wind 7.0 43200 > th dose dependent rect. 16 2
16 191.33 wind 9.0 43200 > th dose independent rect. 13 16
43 191.86 wind 9.0 43200 < th dose independent rect. 12 17
49 191.95 wind 9.0 43200 > th dose independent rect. 14 7
54 191.96 wind 9.0 43200 < th dose independent rect. 13 11
57 191.99 radiation 1.0 1440 < th dose dependent rect. 18 23
60 192.03 wind 7.0 43200 > th dose dependent rect. 11 17
66 192.10 wind 9.0 43200 < th dose independent rect. 13 13
75 192.23 wind 5.0 43200 > th dose independent rect. 20 1
84 192.39 radiation 1.0 1440 > th dose independent rect. 18 23
91 192.48 radiation 1.0 1440 < th dose independent rect. 18 23
108 192.69 radiation 1.0 1440 > th dose independent rect. 8 23
110 192.78 wind 5.0 43200 < th dose independent rect. 20 1
145 193.18 radiation 1.0 1440 < th dose dependent rect. 5 12
150 193.28 radiation 1.0 1440 < th dose dependent rect. 24 17
166 193.41 wind 9.0 43200 < th dose independent sin 17 NA
172 193.44 radiation 1.0 1440 < th dose dependent rect. 2 15
175 193.47 wind 9.0 43200 > th dose independent sin 17 NA
186 193.56 radiation 1.0 1440 < th dose independent rect. 8 23
212 193.90 humidity 70.0 14400 < th dose independent rect. 19 3
256 194.38 radiation 1.0 1440 < th dose independent rect. 5 12
261 194.40 radiation 1.0 1440 > th dose independent rect. 5 12
266 194.43 radiation 1.0 1440 < th dose independent rect. 24 17
267 194.43 wind 7.0 43200 > th dose dependent sin 17 NA
279 194.54 radiation 1.0 1440 < th dose independent rect. 2 15
304 194.65 humidity 70.0 14400 > th dose independent rect. 19 2
353 195.12 radiation 1.0 1440 > th dose independent sin 1 NA
354 195.12 humidity 70.0 14400 > th dose independent rect. 19 10
382 195.20 humidity 70.0 14400 > th dose independent rect. 19 6
395 195.28 radiation 1.0 1440 > th dose independent no NA NA
467 195.48 radiation 1.0 1440 > th dose independent rect. 15 23
473 195.51 radiation 1.0 1440 < th dose dependent rect. 8 22
475 195.54 radiation 1.0 1440 > th dose independent rect. 12 23
483 195.60 radiation 1.0 1440 < th dose dependent sin 2 NA
493 195.68 radiation 1.0 1440 < th dose independent sin 1 NA
498 195.70 radiation 20.0 14400 < th dose independent rect. 16 15
499 195.70 radiation 20.0 14400 > th dose dependent rect. 16 15
520 195.88 radiation 1.0 1440 < th dose independent rect. 5 23
531 195.93 radiation 1.0 1440 < th dose independent rect. 5 20
565 196.02 radiation 1.0 1440 < th dose independent rect. 2 23
568 196.02 temperature 25.0 720 > th dose dependent rect. 18 3
579 196.05 radiation 1.0 1440 < th dose independent no NA NA
638 196.30 radiation 1.0 1440 < th dose independent rect. 15 23
642 196.34 radiation 1.0 1440 < th dose independent rect. 12 23
666 196.50 humidity 70.0 14400 < th dose dependent rect. 18 1
684 196.59 humidity 60.0 43200 > th dose independent rect. 17 1
685 196.59 precipitation 0.1 14400 > th dose independent rect. 2 6
700 196.67 precipitation 0.1 14400 < th dose independent rect. 2 6
702 196.67 precipitation 0.1 14400 < th dose dependent rect. 2 6
705 196.68 radiation 40.0 14400 < th dose dependent rect. 18 12
715 196.70 humidity 70.0 14400 < th dose dependent rect. 18 13
735 196.78 radiation 30.0 14400 < th dose independent rect. 15 17
737 196.79 humidity 70.0 14400 < th dose dependent rect. 18 4
752 196.84 radiation 1.0 14400 > th dose dependent rect. 17 13
760 196.86 radiation 1.0 1440 < th dose dependent rect. 5 23
774 196.91 radiation 1.0 1440 < th dose dependent rect. 5 20
785 196.96 humidity 60.0 43200 < th dose independent rect. 14 4
835 197.12 temperature 25.0 720 > th dose independent rect. 13 10
856 197.18 radiation 40.0 14400 < th dose dependent rect. 21 9
860 197.19 precipitation 0.1 14400 > th dose dependent rect. 2 6
863 197.19 radiation 1.0 1440 < th dose dependent rect. 2 23
872 197.21 radiation 1.0 1440 < th dose dependent no NA NA
898 197.26 humidity 60.0 43200 > th dose independent rect. 14 4
938 197.36 temperature 25.0 720 > th dose independent rect. 11 13
944 197.37 radiation 1.0 1440 < th dose dependent rect. 15 23
948 197.40 humidity 90.0 43200 < th dose dependent rect. 17 1
956 197.45 radiation 20.0 14400 < th dose dependent rect. 1 5
959 197.45 radiation 1.0 1440 < th dose dependent rect. 12 23
975 197.49 radiation 20.0 14400 < th dose dependent rect. 4 2