FiT-DB / Search/ Help/ Sample detail

Os07g0695300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.74 (0.0193) R2 : 0.713
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.13 (0.0483) R2dC : 0.343 R2C : 0.335
β3 : 1.31 (0.0564) R2dE : 0.344 R2E : 0.35
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.222 (0.0407) R2dN8 : 0.0243 R2N8 : 0.0234
σ : 0.363
deviance : 60.69
__
_____
C
peak time of C : 15.1
E
wheather : wind
threshold : 7.848
memory length : 89
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.93
open length of G : 6.43

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
48.83 0.328 9.72 0.681 1.14 1.23 0.00289 -0.329 0.29 15 9.281 89 5 6.27
49.08 0.326 9.72 0.68 1.14 1.23 -0.0242 -- 0.293 15 9.197 89 5 6.27
48.81 0.325 9.72 0.679 1.14 1.22 -- -0.337 0.291 15 9.276 84 5.02 6.3
49.05 0.326 9.72 0.681 1.14 1.24 -- -- 0.291 15 9.3 89 4.98 6.3
77.5 0.41 9.7 0.624 -- 1.44 -- -0.577 0.337 -- 16.3 676 3.53 7.42
76.21 0.409 9.69 0.715 1.37 -- 0.0737 -- 0.347 12.5 -- -- -- --
76.23 0.409 9.69 0.718 1.37 -- -- -- 0.347 12.5 -- -- -- --
73.23 0.399 9.69 0.701 -- 1.39 -- -- 0.373 -- 19.61 747 3.05 6.9
60.69 0.363 9.74 -- 1.13 1.31 -- -- 0.222 15.1 7.848 89 4.93 6.43
194.37 0.651 9.71 0.671 -- -- -- -- 0.324 -- -- -- -- --
89.83 0.443 9.71 -- 1.36 -- -- -- 0.267 12.5 -- -- -- --
84.12 0.427 9.72 -- -- 1.34 -- -- 0.27 -- 22.9 832 3.32 5.32
206.24 0.67 9.73 -- -- -- -- -- 0.25 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 49.76 wind 9.0 90 < th dose dependent rect. 5 6
3 50.58 wind 5.0 90 < th dose independent rect. 5 6
6 51.88 temperature 15.0 90 > th dose independent rect. 5 6
8 52.44 wind 9.0 90 < th dose independent rect. 11 18
10 52.47 precipitation 0.1 90 < th dose independent rect. 5 6
11 52.47 precipitation 0.1 90 < th dose dependent rect. 5 6
12 52.58 radiation 1.0 90 < th dose dependent sin 8 NA
14 52.59 atmosphere 995.0 90 > th dose independent rect. 5 6
15 52.59 atmosphere 1015.0 90 < th dose independent rect. 5 6
16 52.59 temperature 10.0 90 > th dose independent rect. 11 18
17 52.83 humidity 50.0 90 > th dose independent rect. 5 6
22 53.30 precipitation 0.1 90 < th dose independent rect. 11 18
23 53.30 precipitation 0.1 90 < th dose dependent rect. 11 18
28 53.65 temperature 10.0 90 > th dose dependent rect. 5 6
30 53.77 radiation 1.0 90 > th dose independent sin 8 NA
31 53.78 radiation 1.0 90 < th dose independent sin 8 NA
32 53.86 temperature 30.0 90 < th dose independent rect. 5 6
37 54.20 radiation 1.0 90 > th dose independent rect. 4 7
56 54.76 atmosphere 1015.0 90 < th dose independent rect. 11 18
64 55.16 atmosphere 995.0 90 > th dose independent rect. 11 18
76 55.62 wind 5.0 270 < th dose independent rect. 3 7
83 55.80 humidity 50.0 90 > th dose independent rect. 11 18
89 55.97 radiation 40.0 270 < th dose independent rect. 13 10
93 56.04 radiation 40.0 90 < th dose independent rect. 5 6
128 56.27 humidity 60.0 90 > th dose dependent rect. 23 6
133 56.37 temperature 15.0 270 > th dose independent rect. 3 20
137 56.44 temperature 15.0 90 > th dose independent rect. 5 20
148 56.57 temperature 15.0 90 > th dose independent rect. 5 18
160 56.78 temperature 15.0 270 > th dose independent rect. 3 7
167 56.89 wind 9.0 90 < th dose dependent rect. 5 18
172 56.99 wind 1.0 90 > th dose independent rect. 5 6
182 57.14 precipitation 0.1 270 < th dose independent rect. 3 7
192 57.14 precipitation 0.1 270 < th dose dependent rect. 3 7
209 57.38 atmosphere 995.0 270 > th dose independent rect. 3 7
210 57.38 atmosphere 1015.0 270 < th dose independent rect. 3 7
215 57.41 humidity 50.0 270 > th dose independent rect. 3 7
216 57.42 wind 9.0 270 < th dose independent rect. 9 19
226 57.50 temperature 30.0 270 < th dose independent rect. 3 7
232 57.55 temperature 15.0 270 > th dose independent rect. 14 9
236 57.63 wind 3.0 270 < th dose independent rect. 5 3
246 57.71 temperature 10.0 270 > th dose independent rect. 23 15
247 57.71 atmosphere 995.0 270 > th dose independent rect. 23 15
250 57.75 humidity 70.0 90 > th dose dependent rect. 21 8
266 57.81 temperature 10.0 270 > th dose independent rect. 9 19
267 57.82 radiation 1.0 90 < th dose dependent rect. 23 12
271 57.86 radiation 1.0 90 < th dose dependent rect. 23 9
281 57.93 wind 9.0 270 < th dose independent rect. 23 15
283 57.93 humidity 50.0 90 > th dose dependent rect. 5 6
287 57.97 radiation 1.0 90 < th dose dependent rect. 23 6
288 57.99 wind 1.0 90 > th dose independent rect. 11 18
290 58.00 atmosphere 1015.0 270 < th dose independent rect. 23 15
302 58.06 precipitation 0.1 270 < th dose independent rect. 9 19
304 58.06 precipitation 0.1 270 < th dose dependent rect. 9 19
306 58.07 atmosphere 995.0 30 > th dose dependent rect. 5 6
308 58.08 wind 7.0 90 < th dose dependent rect. 5 14
310 58.09 wind 9.0 90 < th dose dependent rect. 5 16
313 58.11 wind 9.0 90 < th dose dependent rect. 23 6
314 58.12 humidity 50.0 270 > th dose dependent rect. 23 4
316 58.13 wind 7.0 270 < th dose dependent rect. 5 3
318 58.14 radiation 1.0 90 < th dose independent rect. 23 6
332 58.19 wind 9.0 90 < th dose independent rect. 23 6
334 58.20 temperature 10.0 90 > th dose independent rect. 23 6
335 58.20 temperature 30.0 90 < th dose independent rect. 23 6
336 58.20 humidity 50.0 90 > th dose independent rect. 23 6
339 58.20 atmosphere 995.0 90 > th dose independent rect. 23 6
347 58.23 precipitation 0.1 270 < th dose independent rect. 23 15
351 58.23 precipitation 0.1 270 < th dose dependent rect. 23 15
353 58.25 precipitation 0.1 90 < th dose independent rect. 23 6
354 58.25 precipitation 0.1 90 < th dose dependent rect. 23 6
364 58.34 radiation 1.0 90 < th dose dependent rect. 23 16
375 58.45 precipitation 0.1 270 < th dose independent rect. 23 4
377 58.45 precipitation 0.1 270 < th dose dependent rect. 23 4
378 58.46 radiation 1.0 90 < th dose independent rect. 23 8
379 58.47 wind 9.0 90 < th dose independent rect. 5 18
384 58.53 radiation 1.0 90 < th dose independent rect. 23 12
386 58.54 humidity 80.0 270 > th dose independent rect. 23 4
388 58.54 humidity 70.0 30 > th dose dependent rect. 2 3
390 58.55 wind 9.0 270 < th dose independent rect. 23 4
391 58.55 temperature 10.0 270 > th dose independent rect. 23 4
392 58.55 temperature 30.0 270 < th dose independent rect. 23 4
393 58.55 humidity 50.0 270 > th dose independent rect. 23 4
396 58.55 atmosphere 995.0 270 > th dose independent rect. 23 4
397 58.55 radiation 1.0 270 < th dose independent rect. 23 4
403 58.55 radiation 1.0 270 < th dose dependent rect. 23 4
408 58.56 humidity 80.0 30 > th dose independent rect. 2 3
417 58.58 wind 9.0 90 < th dose dependent rect. 5 20
420 58.59 radiation 20.0 270 < th dose independent rect. 4 5
440 58.67 precipitation 0.1 90 < th dose independent rect. 5 18
441 58.67 precipitation 0.1 90 < th dose dependent rect. 5 18
442 58.68 atmosphere 1015.0 90 < th dose independent rect. 23 6
453 58.73 radiation 1.0 270 > th dose independent rect. 4 3
468 58.75 radiation 1.0 90 < th dose dependent rect. 1 4
472 58.77 atmosphere 995.0 90 > th dose independent rect. 5 18
483 58.82 wind 5.0 30 < th dose independent rect. 5 21
488 58.83 wind 9.0 270 < th dose independent rect. 14 9
499 58.86 humidity 50.0 270 > th dose independent rect. 23 15
500 58.86 wind 5.0 90 < th dose independent rect. 5 18
503 58.87 atmosphere 1015.0 270 < th dose independent rect. 23 4
507 58.89 atmosphere 1015.0 90 < th dose independent rect. 5 18
510 58.91 precipitation 0.1 270 < th dose independent rect. 14 9
511 58.91 precipitation 0.1 270 < th dose dependent rect. 14 9
530 58.95 temperature 10.0 30 > th dose dependent rect. 2 3
547 59.00 wind 9.0 30 < th dose dependent rect. 2 3
548 59.01 radiation 1.0 90 < th dose independent rect. 1 4
555 59.03 wind 9.0 30 < th dose independent rect. 2 3
556 59.03 temperature 10.0 30 > th dose independent rect. 2 3
558 59.03 temperature 30.0 30 < th dose independent rect. 2 3
559 59.03 humidity 50.0 30 > th dose independent rect. 2 3
562 59.03 atmosphere 995.0 30 > th dose independent rect. 2 3
563 59.03 atmosphere 1010.0 30 < th dose independent rect. 2 3
581 59.03 radiation 1.0 90 < th dose independent rect. 23 17
583 59.03 radiation 40.0 30 < th dose dependent rect. 2 3
597 59.05 precipitation 0.1 270 < th dose independent rect. 3 20
601 59.05 precipitation 0.1 270 < th dose dependent rect. 3 20
603 59.06 temperature 10.0 270 > th dose dependent rect. 5 3
606 59.07 atmosphere 995.0 270 > th dose independent rect. 14 9
614 59.09 radiation 20.0 270 < th dose independent rect. 5 3
615 59.09 precipitation 0.1 30 < th dose independent rect. 2 3
634 59.09 precipitation 0.1 30 < th dose dependent rect. 2 3
635 59.09 wind 9.0 270 < th dose dependent rect. 23 4
640 59.10 wind 9.0 30 < th dose dependent rect. 12 17
648 59.13 temperature 10.0 270 > th dose dependent rect. 23 4
653 59.14 temperature 10.0 270 > th dose independent rect. 5 2
655 59.14 temperature 30.0 270 < th dose independent rect. 5 2
656 59.14 humidity 50.0 270 > th dose independent rect. 5 2
658 59.14 atmosphere 995.0 270 > th dose independent rect. 5 2
659 59.14 atmosphere 1015.0 270 < th dose independent rect. 5 2
660 59.14 radiation 40.0 270 < th dose independent rect. 5 2
672 59.14 radiation 40.0 270 < th dose dependent rect. 4 5
700 59.18 temperature 10.0 30 > th dose dependent rect. 5 20
701 59.18 radiation 40.0 90 < th dose dependent rect. 5 20
725 59.24 wind 9.0 30 < th dose independent rect. 5 21
750 59.27 wind 1.0 270 > th dose independent rect. 14 9
751 59.27 atmosphere 995.0 30 > th dose independent rect. 5 21
758 59.28 temperature 10.0 90 > th dose dependent rect. 23 6
766 59.32 temperature 10.0 1440 > th dose independent rect. 6 6
771 59.32 atmosphere 995.0 1440 > th dose independent rect. 6 6
772 59.32 temperature 10.0 1440 > th dose independent rect. 12 18
781 59.33 radiation 40.0 270 < th dose dependent rect. 5 3
785 59.34 atmosphere 995.0 270 > th dose independent rect. 3 20
827 59.43 wind 9.0 270 < th dose independent rect. 3 20
833 59.44 radiation 40.0 270 < th dose independent rect. 3 20
845 59.48 radiation 40.0 270 < th dose independent rect. 3 7
848 59.49 precipitation 0.1 30 < th dose independent rect. 5 21
849 59.49 atmosphere 1015.0 30 < th dose dependent rect. 2 3
851 59.49 precipitation 0.1 30 < th dose dependent rect. 5 21
855 59.50 radiation 10.0 90 < th dose independent rect. 5 20
874 59.60 humidity 90.0 30 < th dose independent rect. 17 18
881 59.62 wind 3.0 90 < th dose independent rect. 5 14
912 59.66 radiation 1.0 90 < th dose dependent rect. 1 10
938 59.70 radiation 1.0 90 < th dose dependent rect. 1 7
984 59.85 humidity 50.0 270 > th dose dependent rect. 5 2
997 59.89 radiation 40.0 90 < th dose independent rect. 5 20