Os07g0694300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Haem peroxidase, plant/fungal/bacterial family protein.
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Os07g0694300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Haem peroxidase, plant/fungal/bacterial family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.64 | 0.375 | 11.1 | 0.515 | 1.25 | 0.0715 | 0.0475 | -5.09 | -0.128 | 6.5 | 24.34 | 668 | -- | -- |
| 67.39 | 0.382 | 11 | 1.35 | 1.25 | -0.509 | 0.71 | -- | -0.0041 | 6.59 | 29.26 | 294 | -- | -- |
| 63.54 | 0.371 | 11 | 0.516 | 1.26 | 0.0434 | -- | -4.84 | -0.129 | 6.52 | 23.75 | 632 | -- | -- |
| 67.75 | 0.383 | 11 | 1.41 | 1.15 | -0.621 | -- | -- | 0.0107 | 6.71 | 28.27 | 293 | -- | -- |
| 105.95 | 0.479 | 11 | 1.35 | -- | -1.28 | -- | -1.56 | 0.162 | -- | 25.02 | 437 | -- | -- |
| 74.07 | 0.403 | 10.9 | 1.29 | 1.31 | -- | 1.03 | -- | 0.0695 | 6.58 | -- | -- | -- | -- |
| 76.74 | 0.41 | 11 | 1.3 | 1.32 | -- | -- | -- | 0.0662 | 6.54 | -- | -- | -- | -- |
| 106.51 | 0.481 | 11 | 1.56 | -- | -1.46 | -- | -- | 0.168 | -- | 25.44 | 411 | -- | -- |
| 116.67 | 0.503 | 11 | -- | 1.2 | -0.567 | -- | -- | -0.102 | 6.62 | 29.04 | 231 | -- | -- |
| 167.05 | 0.604 | 11 | 1.33 | -- | -- | -- | -- | 0.0933 | -- | -- | -- | -- | -- |
| 121.35 | 0.515 | 11 | -- | 1.33 | -- | -- | -- | -0.0787 | 6.48 | -- | -- | -- | -- |
| 169 | 0.605 | 11 | -- | -- | -1.25 | -- | -- | -0.0246 | -- | 25.8 | 395 | -- | -- |
| 213.95 | 0.683 | 11 | -- | -- | -- | -- | -- | -0.0547 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.33 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 19 |
| 9 | 63.45 | temperature | 25 | 720 | > th | dose dependent | sin | 4 | NA |
| 13 | 63.49 | temperature | 25 | 720 | > th | dose dependent | rect. | 5 | 12 |
| 27 | 63.59 | radiation | 1 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 77 | 64.01 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 78 | 64.01 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 84 | 64.07 | temperature | 25 | 720 | > th | dose dependent | rect. | 5 | 21 |
| 87 | 64.08 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 19 |
| 98 | 64.09 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 124 | 64.14 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 125 | 64.15 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 13 |
| 170 | 64.35 | radiation | 1 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 186 | 64.42 | radiation | 1 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 205 | 64.45 | radiation | 40 | 720 | < th | dose dependent | rect. | 17 | 17 |
| 206 | 64.46 | radiation | 10 | 720 | > th | dose independent | rect. | 17 | 14 |
| 222 | 64.52 | radiation | 10 | 720 | > th | dose independent | rect. | 6 | 1 |
| 239 | 64.63 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 245 | 64.67 | temperature | 30 | 720 | > th | dose independent | sin | 7 | NA |
| 270 | 64.80 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 6 |
| 284 | 64.82 | temperature | 25 | 270 | > th | dose dependent | sin | 11 | NA |
| 290 | 64.86 | radiation | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 301 | 64.90 | radiation | 20 | 720 | < th | dose independent | rect. | 16 | 18 |
| 311 | 64.94 | radiation | 20 | 720 | < th | dose dependent | rect. | 23 | 10 |
| 320 | 64.99 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 10 |
| 346 | 65.03 | temperature | 30 | 720 | > th | dose independent | rect. | 9 | 2 |
| 348 | 65.03 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 10 |
| 368 | 65.05 | radiation | 1 | 720 | > th | dose dependent | sin | 10 | NA |
| 379 | 65.09 | temperature | 30 | 270 | < th | dose independent | sin | 0 | NA |
| 385 | 65.10 | radiation | 20 | 720 | < th | dose independent | rect. | 17 | 16 |
| 387 | 65.12 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 23 |
| 391 | 65.13 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 8 |
| 437 | 65.21 | temperature | 25 | 270 | > th | dose independent | rect. | 15 | 18 |
| 451 | 65.25 | radiation | 40 | 720 | < th | dose dependent | rect. | 2 | 8 |
| 465 | 65.27 | temperature | 10 | 270 | > th | dose dependent | rect. | 13 | 22 |
| 470 | 65.29 | temperature | 30 | 270 | > th | dose independent | sin | 23 | NA |
| 532 | 65.38 | radiation | 20 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 536 | 65.39 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 21 |
| 674 | 65.52 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 17 |
| 676 | 65.52 | temperature | 30 | 270 | > th | dose independent | rect. | 16 | 23 |
| 773 | 65.53 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 17 |
| 788 | 65.54 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 845 | 65.54 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 20 |
| 926 | 65.57 | temperature | 25 | 10 | > th | dose dependent | sin | 11 | NA |
| 936 | 65.58 | wind | 5 | 1440 | < th | dose independent | rect. | 6 | 3 |
| 937 | 65.58 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 23 |
| 948 | 65.59 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 20 |
| 965 | 65.61 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 6 |
| 978 | 65.62 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 993 | 65.63 | radiation | 10 | 720 | > th | dose independent | sin | 10 | NA |