Os07g0694200 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0694200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	2.88	(0.0336)	R²	:	0.174
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	3.9	(0.401)	R²_dE	:	0.171	R²_E	:	0.172
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.0508	(0.0709)	R²_dN8	:	0.0012	R²_N8	:	0.00203
σ	:	0.632
deviance	:	184.17
__

_____

C
peak time of C	:	--
E
wheather	:	radiation
threshold	:	6.69
memory length	:	10
response mode	:	< th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	7.53
open length of G	:	1.56

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
181.81	0.634	2.88	0.157	0.202	3.65	-0.00939	0.161	-0.0313	21	8.112	6	7.4	0.517
181.82	0.633	2.88	0.157	0.202	3.65	-0.0122	--	-0.0312	21	8.133	5	7.55	0.689
181.81	0.633	2.88	0.157	0.202	3.65	--	0.165	-0.0313	21	8.106	5	7.6	0.718
181.82	0.632	2.88	0.157	0.202	3.65	--	--	-0.0312	21	8.133	5	7.55	0.689
184.12	0.635	2.87	0.157	--	3.56	--	0.165	-0.0334	--	8.106	5	7.6	0.718
220.92	0.697	2.88	0.144	0.116	--	-0.0172	--	-0.0645	22.1	--	--	--	--
220.92	0.696	2.88	0.145	0.116	--	--	--	-0.0645	22.1	--	--	--	--
183.61	0.631	2.88	0.147	--	3.73	--	--	-0.0316	--	6.78	8	7.51	1.29
182.47	0.633	2.88	--	0.202	3.64	--	--	-0.0487	21.1	8.133	5	7.55	0.689
221.74	0.696	2.88	0.146	--	--	--	--	-0.0643	--	--	--	--	--
221.48	0.696	2.89	--	0.117	--	--	--	-0.0806	22.2	--	--	--	--
184.17	0.632	2.88	--	--	3.9	--	--	-0.0508	--	6.69	10	7.53	1.56
222.31	0.696	2.88	--	--	--	--	--	-0.0806	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	182.84	radiation	10.0	10	< th	dose dependent	rect.	7	1
10	189.03	radiation	10.0	10	< th	dose independent	rect.	7	2
12	190.25	precipitation	0.1	90	> th	dose independent	rect.	7	1
18	190.25	precipitation	0.1	90	> th	dose dependent	rect.	7	1
39	198.13	radiation	1.0	30	< th	dose independent	rect.	7	7
49	198.71	radiation	10.0	30	< th	dose dependent	rect.	6	8
83	200.93	humidity	80.0	10	> th	dose independent	rect.	8	1
107	202.69	humidity	80.0	10	> th	dose dependent	rect.	7	2
115	202.86	wind	3.0	90	> th	dose independent	rect.	6	1
176	204.59	wind	5.0	10	> th	dose independent	rect.	7	2
178	204.59	wind	3.0	10	> th	dose dependent	rect.	7	1
251	206.11	precipitation	0.1	270	> th	dose independent	rect.	4	4
275	206.34	precipitation	0.1	270	> th	dose dependent	rect.	4	4
278	206.42	precipitation	0.1	10	> th	dose independent	rect.	5	3
294	206.42	precipitation	0.1	10	> th	dose dependent	rect.	5	3
343	207.25	temperature	25.0	90	< th	dose dependent	rect.	12	1
355	207.39	humidity	80.0	10	> th	dose dependent	rect.	6	8
358	207.46	temperature	25.0	10	< th	dose independent	rect.	13	1
379	207.72	precipitation	0.1	10	> th	dose independent	rect.	7	1
416	207.72	precipitation	0.1	10	> th	dose dependent	rect.	7	1
531	208.44	temperature	25.0	10	< th	dose dependent	rect.	14	1
570	208.93	humidity	90.0	30	> th	dose dependent	rect.	6	14
688	210.33	radiation	20.0	720	> th	dose dependent	rect.	6	1
762	210.75	precipitation	0.1	270	> th	dose independent	rect.	4	13
792	211.04	atmosphere	1000.0	10	< th	dose independent	rect.	23	1
817	211.18	radiation	10.0	270	< th	dose dependent	rect.	19	13
858	211.46	radiation	10.0	90	> th	dose independent	rect.	16	20
861	211.53	precipitation	0.1	90	< th	dose independent	rect.	8	13
863	211.53	precipitation	0.1	90	< th	dose dependent	rect.	8	13
869	211.56	radiation	20.0	720	> th	dose independent	rect.	6	1
883	211.57	wind	7.0	720	< th	dose independent	rect.	8	18
906	211.70	precipitation	0.1	270	> th	dose independent	rect.	19	13
913	211.77	wind	7.0	30	> th	dose independent	rect.	17	1
927	211.90	atmosphere	1005.0	10	> th	dose dependent	rect.	13	6
956	212.07	temperature	30.0	90	< th	dose independent	rect.	12	20
964	212.13	radiation	10.0	90	< th	dose independent	rect.	22	10
966	212.17	precipitation	0.1	270	> th	dose independent	sin	10	NA
970	212.18	wind	7.0	720	< th	dose independent	rect.	15	20
986	212.24	precipitation	0.1	270	< th	dose independent	sin	10	NA
988	212.24	precipitation	0.1	270	< th	dose dependent	sin	10	NA