Os07g0693200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pyruvate decarboxylase isozyme 3 (EC 4.1.1.1) (PDC).
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Os07g0693200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pyruvate decarboxylase isozyme 3 (EC 4.1.1.1) (PDC).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 398.18 | 0.938 | 9.46 | 1.11 | 0.587 | 4.24 | 0.627 | 4.78 | -0.619 | 6.68 | 25.1 | 2585 | 7.79 | -- |
| 423.53 | 0.958 | 9.33 | 2 | 0.541 | 4.14 | 0.572 | -- | -0.359 | 6.2 | 25.4 | 2481 | 6.77 | -- |
| 398.86 | 0.93 | 9.46 | 1.12 | 0.572 | 4.29 | -- | 4.89 | -0.621 | 6.74 | 24.9 | 2558 | 7.97 | -- |
| 422.79 | 0.958 | 9.34 | 2.13 | 0.481 | 4.01 | -- | -- | -0.373 | 5.57 | 25.3 | 2468 | 6.28 | -- |
| 411.32 | 0.945 | 9.45 | 1.17 | -- | 4.19 | -- | 4.34 | -0.585 | -- | 24.98 | 2378 | 7.43 | -- |
| 670.06 | 1.21 | 9.53 | 0.644 | 0.684 | -- | 0.598 | -- | -1.36 | 8.86 | -- | -- | -- | -- |
| 671.26 | 1.21 | 9.53 | 0.664 | 0.682 | -- | -- | -- | -1.36 | 8.91 | -- | -- | -- | -- |
| 431.07 | 0.967 | 9.33 | 2.13 | -- | 3.88 | -- | -- | -0.34 | -- | 25.43 | 2287 | 5.73 | -- |
| 517.12 | 1.06 | 9.42 | -- | 0.359 | 2.87 | -- | -- | -0.846 | 5.34 | 26.08 | 2302 | 5.22 | -- |
| 697.82 | 1.23 | 9.55 | 0.664 | -- | -- | -- | -- | -1.36 | -- | -- | -- | -- | -- |
| 682.9 | 1.22 | 9.55 | -- | 0.683 | -- | -- | -- | -1.43 | 8.84 | -- | -- | -- | -- |
| 519.47 | 1.06 | 9.45 | -- | -- | 3.14 | -- | -- | -0.9 | -- | 30.16 | 2204 | 4.88 | -- |
| 709.46 | 1.24 | 9.57 | -- | -- | -- | -- | -- | -1.43 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 403.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 6 | 406.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 8 | 407.94 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 16 |
| 9 | 407.95 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 18 | 409.31 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 21 | 409.64 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 50 | 412.08 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 62 | 413.16 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 135 | 417.63 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 391 | 424.59 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 454 | 426.13 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 459 | 426.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 481 | 426.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 494 | 426.84 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 605 | 429.00 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 624 | 429.33 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 646 | 429.95 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 15 |
| 660 | 430.14 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 15 |
| 712 | 430.93 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 10 |
| 734 | 431.35 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 10 |
| 768 | 432.00 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 772 | 432.02 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 818 | 432.75 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 899 | 433.93 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 13 |