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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0692900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ubiquitin-activating enzyme E1 3.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.82 (0.0492) R2 : 0.32
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.99 (0.143) R2dC : 0.0934 R2C : 0.178
β3 : 2.03 (0.266) R2dE : 0.118 R2E : 0.157
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.583 (0.108) R2dN8 : 0.0629 R2N8 : 0.0131
σ : 0.917
deviance : 387.53
__
_____
C
peak time of C : 16.4
E
wheather : temperature
threshold : 14.8
memory length : 19
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
382.4 0.919 5.81 -0.143 0.952 2.16 0.318 1.41 -0.586 16.6 8.715 19 -- --
383.75 0.912 5.83 -0.332 0.965 2.16 0.645 -- -0.638 16.5 13.51 18 -- --
382.61 0.911 5.8 -0.109 0.95 2.16 -- 1.65 -0.576 16.5 7.609 18 -- --
384.87 0.914 5.83 -0.334 0.96 2.19 -- -- -0.638 16.5 13.48 19 -- --
411.48 0.945 5.79 -0.0754 -- 2.28 -- 1.7 -0.619 -- 24.1 52 -- --
427.55 0.969 5.76 0.0817 1.52 -- 0.913 -- -0.333 15.7 -- -- -- --
430.03 0.971 5.76 0.0955 1.52 -- -- -- -0.328 15.7 -- -- -- --
408.19 0.941 5.81 -0.325 -- 2.37 -- -- -0.62 -- 24.2 95 -- --
387.53 0.917 5.82 -- 0.99 2.03 -- -- -0.583 16.4 14.8 19 -- --
558.75 1.1 5.76 0.0319 -- -- -- -- -0.369 -- -- -- -- --
430.27 0.97 5.76 -- 1.52 -- -- -- -0.339 15.7 -- -- -- --
411.21 0.944 5.8 -- -- 2.33 -- -- -0.576 -- 24.2 85 -- --
558.77 1.1 5.76 -- -- -- -- -- -0.372 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 370.47 temperature 30 270 < th dose independent rect. 2 16
3 373.07 temperature 10 270 > th dose dependent rect. 4 22
4 373.18 temperature 15 10 > th dose dependent rect. 8 18
16 376.39 temperature 30 270 < th dose independent rect. 10 9
36 378.53 temperature 15 10 > th dose dependent rect. 8 14
41 378.77 temperature 15 30 > th dose dependent rect. 19 23
43 378.85 temperature 30 720 < th dose independent rect. 3 11
49 379.13 temperature 25 270 > th dose dependent rect. 17 21
62 379.96 temperature 30 270 < th dose independent rect. 9 22
64 379.96 temperature 15 30 > th dose dependent rect. 23 23
66 380.01 temperature 30 90 < th dose dependent rect. 3 16
85 380.76 temperature 30 270 < th dose independent rect. 23 20
104 381.36 temperature 10 270 > th dose dependent rect. 16 23
111 381.64 temperature 20 10 > th dose dependent rect. 7 22
121 381.95 temperature 30 720 > th dose independent sin 7 NA
129 382.15 temperature 30 720 > th dose independent rect. 8 3
154 382.44 temperature 10 90 > th dose dependent sin 2 NA
169 382.63 temperature 30 90 < th dose dependent rect. 2 21
174 382.68 temperature 10 10 > th dose dependent sin 1 NA
176 382.70 temperature 10 10 > th dose dependent no NA NA
237 383.24 atmosphere 1005 30 > th dose independent rect. 13 19
265 383.44 temperature 25 270 > th dose dependent sin 9 NA
298 383.72 atmosphere 1005 90 > th dose independent rect. 15 17
300 383.72 temperature 30 10 < th dose dependent rect. 2 22
308 383.78 temperature 30 90 < th dose dependent rect. 2 23
336 383.97 temperature 30 90 < th dose dependent rect. 9 23
352 384.16 temperature 30 30 < th dose dependent rect. 11 21
354 384.19 temperature 30 720 < th dose independent rect. 11 2
366 384.33 temperature 30 720 > th dose dependent rect. 8 5
402 384.50 temperature 30 4320 < th dose independent rect. 4 6
446 384.78 temperature 30 4320 > th dose independent rect. 8 2
466 384.89 temperature 30 4320 < th dose independent rect. 8 2
477 384.98 temperature 30 4320 < th dose independent rect. 20 14
489 385.05 temperature 30 720 > th dose dependent sin 7 NA
502 385.10 temperature 25 720 > th dose dependent rect. 8 1
536 385.29 temperature 30 4320 > th dose dependent rect. 8 2
553 385.32 temperature 30 720 < th dose independent sin 3 NA
557 385.35 temperature 30 270 < th dose dependent rect. 23 22
566 385.41 temperature 30 270 < th dose dependent rect. 23 20
569 385.43 temperature 30 720 < th dose independent rect. 7 7
589 385.56 temperature 30 720 < th dose independent rect. 20 17
604 385.61 temperature 25 270 > th dose dependent rect. 17 18
676 386.01 temperature 30 90 < th dose dependent rect. 21 23
687 386.08 temperature 25 10 > th dose dependent rect. 17 23
711 386.14 temperature 10 720 > th dose dependent rect. 4 7
743 386.27 temperature 25 30 > th dose dependent rect. 21 23
822 386.49 temperature 25 4320 > th dose dependent rect. 6 1
828 386.52 temperature 30 720 < th dose independent rect. 9 5
874 386.79 temperature 30 4320 > th dose dependent rect. 11 1
986 387.43 temperature 30 90 < th dose dependent no NA NA
998 387.49 temperature 30 30 < th dose dependent rect. 17 23