Os07g0692600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SNF2-related domain containing protein.
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Os07g0692600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SNF2-related domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.77 | 0.417 | 3.05 | 0.218 | 0.0732 | 1.55 | -0.258 | 4.72 | 0.0394 | 6.87 | 9.284 | 10 | -- | -- |
| 86.05 | 0.432 | 3.04 | 0.183 | 0.0662 | 0.366 | -0.204 | -- | 0.0412 | 6.15 | 9.2 | 16 | -- | -- |
| 78.89 | 0.414 | 3.05 | 0.21 | 0.0765 | 1.51 | -- | 4.76 | 0.0404 | 8.38 | 9.23 | 9 | -- | -- |
| 83.44 | 0.425 | 3.03 | 0.23 | 0.0864 | 0.519 | -- | -- | 0.0554 | 8.38 | 9.2 | 5 | -- | -- |
| 78.49 | 0.413 | 3.05 | 0.196 | -- | 1.75 | -- | 4.79 | 0.0423 | -- | 9.254 | 6 | -- | -- |
| 86.3 | 0.436 | 3.04 | 0.173 | 0.0936 | -- | 0.147 | -- | 0.0327 | 10.5 | -- | -- | -- | -- |
| 86.35 | 0.435 | 3.04 | 0.178 | 0.0982 | -- | -- | -- | 0.0324 | 9.45 | -- | -- | -- | -- |
| 83.85 | 0.426 | 3.03 | 0.211 | -- | 0.669 | -- | -- | 0.0565 | -- | 9.416 | 5 | -- | -- |
| 84.61 | 0.428 | 3.04 | -- | 0.0852 | 0.622 | -- | -- | 0.0252 | 7.86 | 9.4 | 5 | -- | -- |
| 86.92 | 0.436 | 3.04 | 0.177 | -- | -- | -- | -- | 0.0327 | -- | -- | -- | -- | -- |
| 87.19 | 0.437 | 3.04 | -- | 0.0981 | -- | -- | -- | 0.0126 | 9.32 | -- | -- | -- | -- |
| 85 | 0.429 | 3.04 | -- | -- | 0.632 | -- | -- | 0.0255 | -- | 9.405 | 5 | -- | -- |
| 87.75 | 0.437 | 3.04 | -- | -- | -- | -- | -- | 0.013 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.85 | wind | 9.0 | 30 | < th | dose independent | rect. | 23 | 23 |
| 3 | 71.19 | wind | 9.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 4 | 71.19 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 7 | 71.19 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 11 | 71.19 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 21 | 71.19 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 22 | 71.19 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 42 | 71.19 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 24 | 23 |
| 45 | 71.19 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 50 | 71.25 | humidity | 90.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 51 | 71.29 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 52 | 71.31 | temperature | 25.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 53 | 71.31 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 56 | 71.39 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 60 | 71.46 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 22 | 1 |
| 61 | 71.46 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 62 | 71.49 | wind | 1.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 65 | 71.52 | wind | 7.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 67 | 71.52 | temperature | 10.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 69 | 71.52 | temperature | 30.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 70 | 71.52 | humidity | 50.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 74 | 71.52 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 76 | 71.52 | radiation | 1.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 81 | 71.52 | temperature | 10.0 | 30 | > th | dose independent | rect. | 23 | 23 |
| 82 | 71.52 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 88 | 71.53 | wind | 9.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 93 | 71.63 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 94 | 71.64 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 97 | 71.87 | wind | 1.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 99 | 72.09 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 104 | 72.49 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 170 | 78.41 | wind | 9.0 | 10 | > th | dose independent | rect. | 10 | 2 |
| 196 | 78.71 | wind | 9.0 | 10 | > th | dose independent | sin | 6 | NA |
| 202 | 78.77 | wind | 9.0 | 90 | > th | dose independent | rect. | 10 | 1 |
| 217 | 78.82 | wind | 9.0 | 10 | < th | dose independent | sin | 6 | NA |
| 223 | 78.89 | wind | 5.0 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 227 | 78.91 | wind | 7.0 | 90 | > th | dose dependent | rect. | 9 | 2 |
| 228 | 78.91 | wind | 5.0 | 10 | > th | dose dependent | rect. | 9 | 3 |
| 233 | 78.98 | wind | 5.0 | 720 | > th | dose independent | rect. | 5 | 1 |
| 235 | 78.98 | wind | 5.0 | 720 | > th | dose dependent | rect. | 5 | 2 |
| 262 | 79.10 | wind | 9.0 | 90 | > th | dose independent | rect. | 18 | 17 |
| 347 | 79.34 | radiation | 20.0 | 10 | < th | dose independent | rect. | 12 | 1 |
| 386 | 79.43 | wind | 7.0 | 10 | > th | dose dependent | sin | 5 | NA |
| 394 | 79.46 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 395 | 79.46 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 398 | 79.48 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 400 | 79.48 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 638 | 79.94 | wind | 9.0 | 90 | > th | dose dependent | rect. | 18 | 17 |
| 644 | 79.95 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 649 | 79.96 | wind | 7.0 | 90 | > th | dose independent | sin | 5 | NA |
| 663 | 79.97 | wind | 9.0 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 717 | 80.05 | wind | 9.0 | 10 | > th | dose independent | no | NA | NA |