Os07g0692300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os07g0692300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 144.6 | 0.565 | 7.35 | 1.56 | 1.58 | 0.924 | -0.914 | 2.43 | 0.362 | 21.2 | 20.06 | 598 | -- | -- |
| 158.22 | 0.586 | 7.42 | 1.27 | 1.66 | 0.657 | -0.0225 | -- | 0.264 | 21.1 | 20.97 | 631 | -- | -- |
| 146.81 | 0.564 | 7.36 | 1.54 | 1.62 | 0.94 | -- | 2.24 | 0.342 | 21.3 | 19.99 | 448 | -- | -- |
| 157.27 | 0.584 | 7.42 | 1.2 | 1.62 | 0.61 | -- | -- | 0.253 | 21.3 | 20.9 | 530 | -- | -- |
| 287.56 | 0.79 | 7.34 | 1.49 | -- | 1.24 | -- | 2.13 | 0.237 | -- | 20.89 | 722 | -- | -- |
| 169.75 | 0.611 | 7.39 | 1.41 | 1.71 | -- | -0.197 | -- | 0.402 | 21.2 | -- | -- | -- | -- |
| 169.88 | 0.61 | 7.39 | 1.42 | 1.71 | -- | -- | -- | 0.403 | 21.2 | -- | -- | -- | -- |
| 268.76 | 0.764 | 7.44 | 1.06 | -- | 1.23 | -- | -- | -0.054 | -- | 25.2 | 710 | -- | -- |
| 175.81 | 0.618 | 7.5 | -- | 1.7 | 1.02 | -- | -- | -0.0897 | 21.1 | 21.1 | 47520 | -- | -- |
| 339 | 0.86 | 7.34 | 1.43 | -- | -- | -- | -- | 0.394 | -- | -- | -- | -- | -- |
| 223.13 | 0.699 | 7.42 | -- | 1.71 | -- | -- | -- | 0.244 | 21.2 | -- | -- | -- | -- |
| 296.75 | 0.802 | 7.48 | -- | -- | 1.4 | -- | -- | -0.228 | -- | 25.28 | 710 | -- | -- |
| 392.68 | 0.925 | 7.38 | -- | -- | -- | -- | -- | 0.235 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 139.04 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 3 | 139.61 | temperature | 10 | 90 | > th | dose dependent | sin | 5 | NA |
| 29 | 142.70 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 5 |
| 30 | 142.73 | temperature | 20 | 720 | > th | dose independent | rect. | 7 | 21 |
| 33 | 142.74 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 35 | 142.79 | temperature | 20 | 720 | < th | dose independent | sin | 22 | NA |
| 39 | 142.91 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 18 |
| 76 | 144.04 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 14 |
| 83 | 144.15 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 21 |
| 93 | 144.29 | temperature | 20 | 720 | > th | dose independent | sin | 21 | NA |
| 94 | 144.30 | temperature | 20 | 720 | > th | dose independent | rect. | 13 | 22 |
| 115 | 144.61 | temperature | 20 | 1440 | > th | dose independent | sin | 19 | NA |
| 131 | 144.78 | temperature | 20 | 720 | < th | dose independent | sin | 14 | NA |
| 164 | 145.03 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 10 |
| 165 | 145.03 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 14 |
| 178 | 145.08 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 184 | 145.10 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 17 |
| 193 | 145.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 13 | 9 |
| 217 | 145.33 | temperature | 20 | 1440 | < th | dose independent | sin | 18 | NA |
| 242 | 145.47 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 250 | 145.53 | temperature | 20 | 720 | < th | dose independent | rect. | 17 | 23 |
| 252 | 145.53 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 258 | 145.55 | temperature | 20 | 720 | < th | dose independent | rect. | 13 | 23 |
| 260 | 145.56 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 265 | 145.56 | temperature | 20 | 720 | < th | dose independent | rect. | 15 | 23 |
| 281 | 145.62 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 7 |
| 284 | 145.63 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 290 | 145.65 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 4 |
| 320 | 145.74 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 4 |
| 372 | 145.96 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 13 |
| 387 | 146.00 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 23 |
| 449 | 146.20 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 460 | 146.23 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 476 | 146.28 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 15 |
| 489 | 146.33 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 11 |
| 503 | 146.42 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 544 | 146.53 | temperature | 20 | 720 | > th | dose independent | sin | 11 | NA |
| 681 | 147.01 | humidity | 80 | 720 | < th | dose dependent | rect. | 23 | 4 |
| 698 | 147.09 | humidity | 80 | 720 | < th | dose independent | rect. | 23 | 4 |
| 710 | 147.12 | temperature | 30 | 270 | < th | dose dependent | sin | 4 | NA |
| 719 | 147.15 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 812 | 147.47 | temperature | 20 | 270 | > th | dose independent | sin | 7 | NA |
| 834 | 147.53 | temperature | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 990 | 148.02 | temperature | 20 | 720 | < th | dose dependent | rect. | 7 | 16 |