Os07g0689600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nicotianamine synthase 3 (EC 2.5.1.43) (S-adenosyl-L-methionine:S- adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3- carboxypropyltransferase 3) (OsNAS3).
FiT-DB / Search/ Help/ Sample detail
|
Os07g0689600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Nicotianamine synthase 3 (EC 2.5.1.43) (S-adenosyl-L-methionine:S- adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3- carboxypropyltransferase 3) (OsNAS3).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 512.29 | 1.06 | 10.6 | -7.59 | 2.22 | 1.61 | 1.11 | 8.97 | -0.327 | 10.7 | 0.9998 | 4277 | -- | -- |
| 563.84 | 1.11 | 10.3 | -5.93 | 2.04 | 1.05 | 1.25 | -- | 0.159 | 10.9 | 30.61 | 12737 | -- | -- |
| 512.99 | 1.05 | 10.6 | -7.55 | 2.05 | 1.64 | -- | 9.28 | -0.349 | 10.8 | 0.93 | 4218 | -- | -- |
| 564 | 1.11 | 10.4 | -5.75 | 2.31 | 1.21 | -- | -- | 0.275 | 10.8 | 50.82 | 14980 | -- | -- |
| 673.52 | 1.22 | 10.5 | -5.84 | -- | -1.61 | -- | -0.944 | -0.193 | -- | 1.418 | 4060 | -- | -- |
| 615.7 | 1.16 | 10.4 | -5.85 | 2.37 | -- | 1.83 | -- | -0.136 | 10.9 | -- | -- | -- | -- |
| 629.71 | 1.18 | 10.4 | -5.78 | 2.36 | -- | -- | -- | -0.132 | 10.8 | -- | -- | -- | -- |
| 679.34 | 1.22 | 10.5 | -5.84 | -- | -1.62 | -- | -- | -0.196 | -- | 1.418 | 4060 | -- | -- |
| 1358.04 | 1.72 | 10.6 | -- | 2.15 | 2.29 | -- | -- | 0.598 | 10.7 | 10.02 | 24343 | -- | -- |
| 974.83 | 1.46 | 10.5 | -5.83 | -- | -- | -- | -- | -0.147 | -- | -- | -- | -- | -- |
| 1510.57 | 1.82 | 10.3 | -- | 2.41 | -- | -- | -- | 0.512 | 11 | -- | -- | -- | -- |
| 1495.93 | 1.8 | 10.6 | -- | -- | -1.84 | -- | -- | 0.0539 | -- | 7.904 | 25 | -- | -- |
| 1871.45 | 2.02 | 10.3 | -- | -- | -- | -- | -- | 0.5 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 485.62 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 16 | 9 |
| 4 | 488.34 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 13 | 12 |
| 6 | 489.74 | wind | 1.0 | 14400 | > th | dose independent | rect. | 16 | 9 |
| 8 | 489.93 | wind | 1.0 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 13 | 491.26 | wind | 1.0 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 14 | 491.57 | wind | 1.0 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 17 | 491.80 | wind | 1.0 | 14400 | < th | dose independent | rect. | 13 | 12 |
| 27 | 494.00 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 4 |
| 28 | 494.08 | wind | 1.0 | 14400 | > th | dose independent | rect. | 12 | 13 |
| 45 | 496.13 | wind | 1.0 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 54 | 497.84 | wind | 1.0 | 14400 | < th | dose dependent | sin | 17 | NA |
| 58 | 498.94 | wind | 1.0 | 14400 | > th | dose independent | sin | 17 | NA |
| 64 | 499.57 | wind | 1.0 | 14400 | < th | dose independent | sin | 17 | NA |
| 104 | 502.99 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 12 | 19 |
| 131 | 504.91 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 12 | 19 |
| 132 | 504.92 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 19 | 5 |
| 164 | 507.19 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 166 | 507.39 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 167 | 507.40 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 172 | 507.62 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 13 | 18 |
| 173 | 507.63 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 17 | 14 |
| 184 | 507.97 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 15 |
| 185 | 507.97 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 15 |
| 197 | 508.43 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 17 | 23 |
| 217 | 509.21 | radiation | 1.0 | 4320 | < th | dose independent | sin | 12 | NA |
| 223 | 509.46 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 229 | 509.82 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 24 | 7 |
| 230 | 509.87 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 22 | 9 |
| 249 | 510.44 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 17 | 23 |
| 256 | 510.52 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 6 |
| 258 | 510.59 | temperature | 15.0 | 270 | > th | dose independent | rect. | 9 | 15 |
| 263 | 510.84 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 22 | 4 |
| 264 | 510.84 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 267 | 511.02 | radiation | 1.0 | 4320 | > th | dose independent | sin | 13 | NA |
| 274 | 511.18 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 297 | 511.82 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 6 |
| 299 | 511.82 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 6 |
| 323 | 512.34 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 8 |
| 326 | 512.38 | temperature | 15.0 | 270 | > th | dose independent | rect. | 19 | 18 |
| 329 | 512.64 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 22 | 18 |
| 331 | 512.70 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 5 | 11 |
| 333 | 512.72 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 5 | 11 |
| 340 | 512.77 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 360 | 513.02 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 22 | 9 |
| 387 | 513.34 | radiation | 1.0 | 4320 | < th | dose dependent | sin | 12 | NA |
| 397 | 513.60 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 22 |
| 415 | 513.98 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 5 | 21 |
| 425 | 514.11 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 17 | 9 |
| 427 | 514.12 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 5 | 14 |
| 431 | 514.20 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 444 | 514.35 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 22 | 21 |
| 448 | 514.38 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 17 | 6 |
| 457 | 514.42 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 3 | 22 |
| 464 | 514.45 | radiation | 1.0 | 4320 | < th | dose independent | no | NA | NA |
| 470 | 514.46 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 24 | 23 |
| 512 | 514.72 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 24 | 13 |
| 516 | 514.93 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 24 | 13 |
| 518 | 514.93 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 24 | 13 |
| 521 | 515.01 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 5 | 11 |
| 535 | 515.33 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 24 | 16 |
| 538 | 515.40 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 22 | 18 |
| 543 | 515.47 | humidity | 60.0 | 270 | > th | dose independent | rect. | 24 | 9 |
| 553 | 515.58 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 5 | 14 |
| 563 | 515.59 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 10 |
| 564 | 515.59 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 10 |
| 572 | 515.69 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 573 | 515.69 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 585 | 515.78 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 10 |
| 589 | 515.84 | temperature | 15.0 | 270 | > th | dose independent | rect. | 19 | 6 |
| 600 | 515.93 | radiation | 1.0 | 4320 | > th | dose independent | no | NA | NA |
| 672 | 516.25 | radiation | 1.0 | 4320 | < th | dose dependent | sin | 7 | NA |
| 704 | 516.55 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 3 |
| 718 | 516.66 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 725 | 516.71 | wind | 9.0 | 270 | < th | dose independent | rect. | 9 | 15 |
| 734 | 516.81 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 6 |
| 783 | 517.30 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 22 | 12 |
| 805 | 517.41 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 7 |
| 806 | 517.41 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 7 |
| 869 | 517.65 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 24 | 9 |
| 885 | 517.70 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 24 | 13 |
| 905 | 517.75 | temperature | 10.0 | 270 | > th | dose independent | rect. | 24 | 9 |
| 907 | 517.75 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 24 | 9 |
| 911 | 517.76 | wind | 9.0 | 270 | < th | dose independent | rect. | 24 | 9 |
| 913 | 517.76 | radiation | 40.0 | 270 | < th | dose independent | rect. | 24 | 9 |
| 928 | 517.83 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 5 | 14 |
| 942 | 517.90 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 5 | 20 |