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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0688700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.2 (0.0833) R2 : 0.336
β1 : -3.33 (0.308) R2dD : 0.181 R2D : 0.167
β2 : 1.16 (0.218) R2dC : 0.0416 R2C : 0.0328
β3 : 1.41 (0.338) R2dE : 0.0263 R2E : 0.0346
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -4.95 (1) R2dD*E : 0.037 R2D*E : 0.0614
γ1 : -0.979 (0.178) R2dN8 : 0.0593 R2N8 : 0.00352
σ : 1.55
deviance : 1112.24
__
_____
C
peak time of C : 5.75
E
wheather : atmosphere
threshold : 1010
memory length : 71
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 18.7
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1109.03 1.56 4.2 -3.32 1.17 1.41 -1.16 -4.92 -0.974 5.82 1010 73 18.4 --
1166.02 1.59 4.19 -3.52 1.2 1.53 -1.75 -- -0.985 6.29 1010 80 18.3 --
1112.24 1.55 4.2 -3.33 1.16 1.41 -- -4.95 -0.979 5.75 1010 71 18.7 --
1171.54 1.59 4.21 -3.55 1.18 1.63 -- -- -0.994 5.75 1010 78 18.6 --
1179.81 1.6 4.21 -3.3 -- 1.54 -- -5.04 -0.968 -- 1010 71 20.1 --
1210.75 1.63 4.2 -3.57 1.3 -- -2.3 -- -0.959 7 -- -- -- --
1223.38 1.64 4.2 -3.62 1.31 -- -- -- -0.956 6.6 -- -- -- --
1241.46 1.64 4.24 -3.52 -- 1.75 -- -- -1.01 -- 1010 69 19.9 --
1503.85 1.81 4.13 -- 1.11 1.82 -- -- -0.607 5.73 1010 82 18 --
1312.68 1.69 4.22 -3.59 -- -- -- -- -0.93 -- -- -- -- --
1569.17 1.85 4.11 -- 1.26 -- -- -- -0.553 6.76 -- -- -- --
1566.53 1.84 4.13 -- -- 1.83 -- -- -0.584 -- 1010 82 19.6 --
1652.75 1.9 4.13 -- -- -- -- -- -0.532 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1113.04 atmosphere 1005 10 > th dose dependent rect. 24 12
2 1113.19 wind 7 14400 > th dose independent rect. 20 17
3 1113.34 wind 7 14400 < th dose independent rect. 20 17
4 1114.22 humidity 80 43200 < th dose dependent rect. 5 1
6 1115.07 humidity 80 43200 < th dose dependent rect. 4 3
7 1115.58 wind 9 43200 > th dose dependent rect. 14 1
8 1115.64 humidity 60 43200 < th dose independent rect. 5 2
11 1116.06 radiation 10 43200 < th dose independent rect. 5 2
12 1116.24 radiation 10 43200 < th dose independent rect. 20 11
14 1116.28 humidity 60 43200 > th dose independent rect. 5 2
15 1116.28 radiation 10 43200 < th dose independent rect. 3 4
16 1116.28 radiation 10 43200 < th dose independent rect. 1 6
18 1116.29 radiation 10 43200 < th dose independent rect. 23 8
23 1116.32 wind 7 14400 > th dose dependent rect. 20 17
30 1117.84 wind 7 14400 > th dose independent sin 6 NA
36 1118.37 wind 9 43200 > th dose independent rect. 14 2
37 1118.53 wind 7 14400 < th dose independent sin 6 NA
43 1119.41 wind 9 43200 > th dose dependent rect. 13 3
46 1119.54 wind 9 43200 < th dose independent rect. 14 1
49 1119.86 wind 9 43200 > th dose dependent rect. 11 4
54 1120.30 wind 5 14400 > th dose dependent sin 5 NA
68 1121.19 atmosphere 1005 10 > th dose dependent rect. 24 17
71 1121.25 humidity 80 43200 < th dose dependent rect. 21 2
79 1121.90 humidity 60 43200 < th dose independent rect. 23 9
81 1121.94 atmosphere 1005 10 > th dose dependent rect. 24 21
87 1122.22 atmosphere 1005 10 > th dose dependent rect. 24 19
89 1122.41 atmosphere 1005 10 > th dose dependent rect. 3 9
97 1122.68 wind 5 14400 > th dose dependent rect. 23 15
107 1123.05 wind 9 43200 < th dose independent rect. 11 4
111 1123.16 humidity 80 43200 < th dose dependent rect. 21 10
116 1123.25 atmosphere 1010 90 < th dose independent rect. 5 12
158 1124.64 atmosphere 1005 10 > th dose dependent sin 4 NA
164 1124.80 atmosphere 1010 90 < th dose independent rect. 5 10
165 1124.88 wind 5 14400 > th dose dependent rect. 4 9
167 1124.96 radiation 1 43200 > th dose dependent rect. 4 2
178 1124.99 wind 5 14400 > th dose dependent rect. 5 7
188 1125.39 humidity 60 43200 > th dose independent rect. 24 8
211 1126.07 atmosphere 1005 10 > th dose dependent rect. 24 23
243 1126.86 radiation 40 43200 < th dose independent rect. 15 20
244 1126.91 humidity 60 4320 < th dose independent rect. 18 1
248 1127.01 radiation 40 43200 > th dose dependent rect. 10 1
264 1127.49 atmosphere 1005 270 > th dose dependent rect. 24 9
289 1128.20 atmosphere 1005 10 > th dose dependent rect. 7 5
327 1129.46 radiation 10 43200 < th dose independent rect. 17 1
332 1129.55 humidity 70 720 > th dose independent rect. 18 13
334 1129.60 temperature 15 720 > th dose independent rect. 21 8
337 1129.70 atmosphere 1010 90 > th dose independent rect. 9 3
362 1129.81 atmosphere 1005 10 > th dose dependent rect. 3 14
363 1129.84 temperature 15 720 > th dose independent rect. 17 16
369 1129.92 atmosphere 1010 90 > th dose independent sin 0 NA
394 1130.40 atmosphere 1010 90 > th dose independent rect. 24 13
496 1130.55 atmosphere 1010 90 < th dose independent sin 0 NA
504 1130.74 radiation 40 43200 < th dose independent rect. 10 1
510 1130.81 radiation 40 43200 < th dose independent sin 11 NA
525 1130.94 humidity 70 720 < th dose independent rect. 17 15
597 1131.82 radiation 40 43200 < th dose independent rect. 18 17
605 1131.83 radiation 40 43200 < th dose independent rect. 20 15
608 1131.85 radiation 40 43200 < th dose independent rect. 3 8
609 1131.85 radiation 20 43200 < th dose independent rect. 16 8
610 1131.85 radiation 40 43200 < th dose independent rect. 1 10
611 1131.85 radiation 20 43200 < th dose independent rect. 16 10
618 1131.87 radiation 20 43200 < th dose independent rect. 16 6
624 1131.90 radiation 40 43200 < th dose independent rect. 7 4
758 1132.19 humidity 60 43200 > th dose independent rect. 10 2
772 1132.32 temperature 15 720 > th dose independent rect. 18 23
786 1132.56 wind 7 14400 > th dose independent rect. 5 7
788 1132.62 humidity 70 720 < th dose independent rect. 17 3
895 1133.41 radiation 10 43200 > th dose dependent rect. 17 1
925 1133.58 radiation 40 43200 > th dose dependent rect. 15 20
935 1133.65 radiation 40 43200 > th dose dependent rect. 7 4
979 1133.88 atmosphere 1015 1440 < th dose independent rect. 3 3