Os07g0687700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transcription factor HBP-1b(C38) (Fragment).
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Os07g0687700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcription factor HBP-1b(C38) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.11 | 0.282 | 11.2 | 0.885 | 0.439 | -1.89 | -0.975 | 0.957 | 0.257 | 2.85 | 23.85 | 858 | -- | -- |
| 36.42 | 0.281 | 11.2 | 0.703 | 0.474 | -1.8 | -0.95 | -- | 0.206 | 3.17 | 23.77 | 873 | -- | -- |
| 39.15 | 0.291 | 11.2 | 0.871 | 0.486 | -1.87 | -- | 0.773 | 0.245 | 2.94 | 23.95 | 882 | -- | -- |
| 38.94 | 0.291 | 11.2 | 0.702 | 0.538 | -1.75 | -- | -- | 0.199 | 3.7 | 23.93 | 923 | -- | -- |
| 45.65 | 0.315 | 11.2 | 0.892 | -- | -1.89 | -- | 1.08 | 0.298 | -- | 23.2 | 680 | -- | -- |
| 113.77 | 0.5 | 11.2 | 0.246 | 0.691 | -- | 0.097 | -- | -0.02 | 6.78 | -- | -- | -- | -- |
| 113.79 | 0.5 | 11.2 | 0.248 | 0.692 | -- | -- | -- | -0.0204 | 6.72 | -- | -- | -- | -- |
| 45.81 | 0.315 | 11.2 | 0.688 | -- | -1.82 | -- | -- | 0.25 | -- | 23.1 | 681 | -- | -- |
| 51.15 | 0.333 | 11.2 | -- | 0.541 | -1.57 | -- | -- | 0.0957 | 4.14 | 24.74 | 927 | -- | -- |
| 138.77 | 0.55 | 11.3 | 0.264 | -- | -- | -- | -- | -0.00675 | -- | -- | -- | -- | -- |
| 115.41 | 0.503 | 11.2 | -- | 0.695 | -- | -- | -- | -0.048 | 6.7 | -- | -- | -- | -- |
| 57.47 | 0.353 | 11.2 | -- | -- | -1.68 | -- | -- | 0.147 | -- | 23.32 | 653 | -- | -- |
| 140.6 | 0.553 | 11.3 | -- | -- | -- | -- | -- | -0.036 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.63 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 22 |
| 12 | 40.72 | temperature | 25 | 720 | > th | dose dependent | rect. | 7 | 21 |
| 25 | 40.92 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 32 | 40.95 | temperature | 25 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 115 | 42.93 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 7 |
| 120 | 43.04 | temperature | 25 | 720 | > th | dose dependent | sin | 19 | NA |
| 178 | 43.88 | temperature | 25 | 1440 | > th | dose dependent | sin | 1 | NA |
| 480 | 45.88 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 489 | 45.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 15 |
| 614 | 46.87 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 17 |
| 855 | 48.28 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 16 |
| 885 | 48.43 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 1 |