Os07g0687500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : PpiC-type peptidyl-prolyl cis-trans isomerase domain containing protein.
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Os07g0687500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : PpiC-type peptidyl-prolyl cis-trans isomerase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.4 | 0.334 | 12.1 | 0.429 | 1.36 | -1.34 | 0.588 | 5.3 | -0.448 | 16.9 | 21.11 | 3939 | -- | -- |
| 72.53 | 0.397 | 12.2 | -0.192 | 1.31 | -1.39 | 0.266 | -- | -0.519 | 16.5 | 11.82 | 24139 | -- | -- |
| 51.27 | 0.334 | 12.1 | 0.428 | 1.36 | -1.34 | -- | 5.3 | -0.446 | 16.9 | 21.15 | 3906 | -- | -- |
| 71.78 | 0.395 | 12.3 | -0.278 | 1.38 | -1.4 | -- | -- | -0.54 | 16.7 | 10.33 | 24269 | -- | -- |
| 148.08 | 0.567 | 12.1 | 0.436 | -- | -1.51 | -- | 5.32 | -0.465 | -- | 21.53 | 4067 | -- | -- |
| 102.33 | 0.474 | 12.4 | -1.54 | 1.41 | -- | 0.453 | -- | -1.08 | 16.6 | -- | -- | -- | -- |
| 102.88 | 0.475 | 12.4 | -1.53 | 1.41 | -- | -- | -- | -1.07 | 16.6 | -- | -- | -- | -- |
| 172.56 | 0.612 | 12.2 | -0.265 | -- | -1.46 | -- | -- | -0.554 | -- | 10.73 | 24264 | -- | -- |
| 72.7 | 0.397 | 12.2 | -- | 1.38 | -1.59 | -- | -- | -0.464 | 16.7 | 5.743 | 24559 | -- | -- |
| 209.43 | 0.676 | 12.4 | -1.59 | -- | -- | -- | -- | -1.11 | -- | -- | -- | -- | -- |
| 164.91 | 0.601 | 12.3 | -- | 1.44 | -- | -- | -- | -0.903 | 16.6 | -- | -- | -- | -- |
| 173.01 | 0.613 | 12.2 | -- | -- | -1.67 | -- | -- | -0.47 | -- | 6.817 | 24266 | -- | -- |
| 276 | 0.775 | 12.3 | -- | -- | -- | -- | -- | -0.935 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.75 | temperature | 15 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 2 | 47.82 | temperature | 15 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 3 | 47.82 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 4 |
| 4 | 47.87 | radiation | 40 | 14400 | < th | dose independent | rect. | 1 | 7 |
| 6 | 47.88 | radiation | 40 | 14400 | < th | dose independent | rect. | 3 | 5 |
| 8 | 47.92 | temperature | 15 | 43200 | > th | dose independent | rect. | 1 | 3 |
| 9 | 47.92 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 11 | 47.93 | temperature | 15 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 50 | 48.23 | radiation | 40 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 58 | 48.27 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 12 |
| 82 | 48.41 | radiation | 30 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 89 | 48.43 | radiation | 30 | 43200 | < th | dose independent | rect. | 20 | 11 |
| 93 | 48.44 | radiation | 30 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 117 | 48.51 | temperature | 15 | 43200 | < th | dose independent | sin | 8 | NA |
| 138 | 48.56 | temperature | 15 | 43200 | > th | dose independent | rect. | 22 | 9 |
| 168 | 48.62 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 12 |
| 169 | 48.62 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 14 |
| 199 | 48.71 | temperature | 15 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 253 | 48.80 | temperature | 15 | 43200 | > th | dose independent | sin | 8 | NA |
| 396 | 49.05 | temperature | 15 | 43200 | < th | dose independent | rect. | 10 | 21 |
| 405 | 49.07 | temperature | 15 | 43200 | > th | dose independent | rect. | 10 | 20 |
| 571 | 49.26 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 579 | 49.26 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 587 | 49.28 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 610 | 49.31 | temperature | 15 | 43200 | > th | dose independent | no | NA | NA |
| 615 | 49.32 | temperature | 15 | 43200 | < th | dose independent | no | NA | NA |
| 624 | 49.32 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 634 | 49.34 | temperature | 15 | 43200 | < th | dose dependent | sin | 9 | NA |
| 691 | 49.46 | temperature | 15 | 43200 | < th | dose independent | rect. | 4 | 23 |
| 702 | 49.49 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 706 | 49.49 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 709 | 49.50 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 716 | 49.51 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 3 |
| 752 | 49.60 | temperature | 15 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 758 | 49.62 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 775 | 49.65 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 795 | 49.69 | temperature | 15 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 815 | 49.76 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 816 | 49.76 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 824 | 49.80 | temperature | 15 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 858 | 49.89 | radiation | 20 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 886 | 49.94 | temperature | 15 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 892 | 49.95 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 11 |