Os07g0686400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Centromere protein-like protein (Fragment).
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Os07g0686400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Centromere protein-like protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 106.54 | 0.485 | 7.19 | -1.29 | 1.71 | 0.721 | 1.72 | 2.77 | 0.287 | 20.9 | 93.16 | 136 | -- | -- |
| 115 | 0.499 | 7.21 | -1.29 | 1.68 | 0.817 | 1.56 | -- | 0.293 | 21.1 | 93.21 | 125 | -- | -- |
| 116.11 | 0.502 | 7.2 | -1.36 | 1.72 | 0.649 | -- | 2.57 | 0.299 | 20.8 | 92.64 | 125 | -- | -- |
| 122.79 | 0.516 | 7.21 | -1.34 | 1.68 | 0.929 | -- | -- | 0.298 | 20.9 | 93.65 | 76 | -- | -- |
| 247.39 | 0.733 | 7.15 | -1.26 | -- | 0.558 | -- | 1.87 | 0.297 | -- | 75.07 | 2 | -- | -- |
| 123.88 | 0.522 | 7.23 | -1.22 | 1.59 | -- | 1.61 | -- | 0.206 | 21.7 | -- | -- | -- | -- |
| 133.17 | 0.54 | 7.23 | -1.28 | 1.59 | -- | -- | -- | 0.206 | 21.5 | -- | -- | -- | -- |
| 258.38 | 0.749 | 7.17 | -1.31 | -- | 0.608 | -- | -- | 0.264 | -- | 75 | 2 | -- | -- |
| 169.39 | 0.606 | 7.19 | -- | 1.66 | 0.789 | -- | -- | 0.416 | 21 | 93.88 | 86 | -- | -- |
| 281.63 | 0.784 | 7.18 | -1.27 | -- | -- | -- | -- | 0.201 | -- | -- | -- | -- | -- |
| 176.03 | 0.621 | 7.2 | -- | 1.59 | -- | -- | -- | 0.348 | 21.4 | -- | -- | -- | -- |
| 246.81 | 0.732 | 7.2 | -- | -- | -1.63 | -- | -- | 0.142 | -- | 80.53 | 714 | -- | -- |
| 323.86 | 0.84 | 7.15 | -- | -- | -- | -- | -- | 0.341 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 93.49 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 6 |
| 2 | 94.52 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 23 | 7 |
| 9 | 95.93 | wind | 3.0 | 270 | < th | dose independent | rect. | 23 | 7 |
| 12 | 96.08 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 2 | 6 |
| 14 | 96.15 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 8 |
| 17 | 96.30 | radiation | 1.0 | 270 | > th | dose independent | sin | 7 | NA |
| 20 | 96.48 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 24 | 8 |
| 21 | 96.50 | radiation | 1.0 | 270 | < th | dose independent | sin | 7 | NA |
| 23 | 96.54 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 23 | 7 |
| 24 | 96.63 | wind | 7.0 | 270 | < th | dose dependent | rect. | 23 | 7 |
| 32 | 96.94 | radiation | 1.0 | 270 | < th | dose dependent | sin | 7 | NA |
| 41 | 97.16 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 8 |
| 45 | 97.33 | humidity | 60.0 | 270 | > th | dose independent | rect. | 18 | 17 |
| 49 | 97.48 | wind | 7.0 | 270 | < th | dose independent | rect. | 13 | 16 |
| 53 | 97.66 | wind | 9.0 | 270 | < th | dose dependent | rect. | 13 | 16 |
| 56 | 97.72 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 8 |
| 57 | 97.72 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 8 |
| 58 | 97.76 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 8 |
| 60 | 97.77 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 8 |
| 61 | 97.77 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 8 |
| 62 | 97.77 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 8 |
| 63 | 97.77 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 16 |
| 69 | 97.94 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 20 |
| 80 | 98.22 | radiation | 1.0 | 270 | > th | dose independent | rect. | 5 | 6 |
| 105 | 98.43 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 23 | 8 |
| 138 | 98.71 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 16 |
| 142 | 98.76 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 11 |
| 199 | 99.23 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 23 | 7 |
| 204 | 99.32 | radiation | 40.0 | 270 | < th | dose independent | rect. | 18 | 17 |
| 211 | 99.38 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 16 |
| 214 | 99.38 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 16 |
| 228 | 99.49 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 23 | 18 |
| 284 | 99.89 | humidity | 80.0 | 270 | > th | dose independent | rect. | 23 | 7 |
| 298 | 99.94 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 17 |
| 311 | 100.01 | temperature | 10.0 | 270 | > th | dose independent | rect. | 23 | 7 |
| 312 | 100.01 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 7 |
| 313 | 100.01 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 7 |
| 316 | 100.01 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 7 |
| 327 | 100.08 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 16 |
| 328 | 100.08 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 16 |
| 329 | 100.10 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 17 |
| 347 | 100.26 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 23 | 7 |
| 361 | 100.27 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 2 | 6 |
| 371 | 100.30 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 2 | 6 |
| 377 | 100.35 | radiation | 40.0 | 270 | < th | dose independent | rect. | 12 | 17 |
| 398 | 100.47 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 7 |
| 399 | 100.47 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 7 |
| 409 | 100.52 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 16 |
| 410 | 100.53 | temperature | 10.0 | 270 | > th | dose independent | rect. | 10 | 8 |
| 411 | 100.53 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 10 | 8 |
| 412 | 100.53 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 16 |
| 429 | 100.65 | wind | 9.0 | 270 | < th | dose independent | rect. | 18 | 16 |
| 430 | 100.65 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 16 |
| 441 | 100.68 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 16 |
| 443 | 100.68 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 16 |
| 462 | 100.80 | wind | 9.0 | 270 | < th | dose independent | rect. | 10 | 8 |
| 505 | 100.97 | wind | 1.0 | 270 | > th | dose independent | rect. | 5 | 8 |
| 537 | 101.07 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 24 | 8 |
| 542 | 101.10 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 10 | 8 |
| 545 | 101.10 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 10 | 8 |
| 551 | 101.14 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 552 | 101.14 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 7 | 7 |
| 595 | 101.36 | wind | 1.0 | 30 | > th | dose independent | rect. | 19 | 16 |
| 656 | 101.58 | humidity | 90.0 | 90 | < th | dose independent | rect. | 6 | 7 |
| 661 | 101.59 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 13 | 16 |
| 740 | 101.77 | radiation | 20.0 | 10 | < th | dose independent | rect. | 2 | 6 |
| 775 | 101.85 | wind | 5.0 | 10 | < th | dose dependent | rect. | 2 | 6 |
| 783 | 101.87 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 2 | 6 |
| 790 | 101.89 | temperature | 20.0 | 10 | > th | dose independent | rect. | 2 | 5 |
| 791 | 101.89 | humidity | 80.0 | 10 | > th | dose independent | rect. | 2 | 6 |
| 799 | 101.91 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 2 | 5 |
| 803 | 101.92 | wind | 1.0 | 270 | > th | dose independent | rect. | 10 | 8 |
| 817 | 101.99 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 17 |
| 863 | 102.09 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 4 | 3 |
| 865 | 102.09 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 24 | 8 |
| 942 | 102.22 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 963 | 102.29 | humidity | 90.0 | 90 | < th | dose independent | rect. | 3 | 10 |
| 970 | 102.30 | wind | 5.0 | 30 | < th | dose dependent | rect. | 24 | 8 |
| 988 | 102.37 | humidity | 50.0 | 270 | > th | dose independent | rect. | 13 | 16 |