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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0686300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.99 (0.0775) R2 : 0.379
β1 : 0.0577 (0.237) R2dD : 3.93e-05 R2D : -0.151
β2 : 0.888 (0.137) R2dC : 0.0565 R2C : -0.0651
β3 : 17 (1.68) R2dE : 3.2 R2E : -1.73
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 38.6 (4.67) R2dD*E : 2.13 R2D*E : -3.04
γ1 : -0.348 (0.123) R2dN8 : 0.016 R2N8 : -0.0904
σ : 1.05
deviance : 512.23
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_____
C
peak time of C : 1.37
E
wheather : radiation
threshold : 0.6502
memory length : 971
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11
open length of G : 6.03

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
515.65 1.07 3.99 -0.164 0.855 16.4 -1.13 37.7 -0.375 1.36 0.8125 975 10.9 6.1
685.38 1.23 3.62 -1.34 1.09 1.57 -1.05 -- -0.531 1.16 0.08591 227 9.16 7.96
512.23 1.05 3.99 0.0577 0.888 17 -- 38.6 -0.348 1.37 0.6502 971 11 6.03
592.64 1.13 3.63 -0.768 0.815 3.11 -- -- -0.266 1.33 3.455 1241 7.92 8.73
556.94 1.1 4.01 0.181 -- 18.4 -- 41.7 -0.314 -- 0.5937 966 11 6.05
693.33 1.23 3.62 -1.42 1.05 -- -0.825 -- -0.556 0.987 -- -- -- --
696.14 1.24 3.62 -1.39 1.05 -- -- -- -0.551 0.886 -- -- -- --
642.54 1.18 3.63 -0.619 -- 3.32 -- -- -0.264 -- 3.441 1228 7.55 8.95
595.77 1.14 3.6 -- 1.03 3.31 -- -- -0.122 1.1 3.685 1346 7.28 8.98
764.99 1.29 3.6 -1.36 -- -- -- -- -0.532 -- -- -- -- --
747.37 1.28 3.59 -- 1.03 -- -- -- -0.396 0.827 -- -- -- --
647.09 1.18 3.49 -- -- 3.5 -- -- -0.0297 -- 3.645 1236 7.42 9.13
813.44 1.33 3.57 -- -- -- -- -- -0.381 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 564.04 radiation 1 720 < th dose dependent rect. 11 6
14 579.03 wind 7 4320 > th dose independent rect. 18 1
17 582.19 wind 7 4320 < th dose independent rect. 18 1
18 582.48 radiation 1 1440 < th dose independent rect. 11 2
19 582.48 radiation 1 1440 < th dose dependent rect. 11 2
20 582.82 wind 7 4320 > th dose independent rect. 17 4
23 583.19 radiation 1 1440 < th dose independent rect. 9 4
24 583.19 radiation 1 1440 < th dose dependent rect. 9 4
27 583.95 radiation 1 1440 < th dose independent rect. 13 1
28 583.95 radiation 1 1440 < th dose dependent rect. 13 1
35 584.10 wind 7 4320 > th dose dependent rect. 17 2
44 585.05 wind 7 4320 < th dose independent rect. 17 4
47 585.14 radiation 1 1440 > th dose independent rect. 11 1
62 586.19 radiation 1 1440 > th dose independent rect. 9 6
64 586.46 radiation 1 1440 > th dose independent rect. 13 1
119 593.80 humidity 80 1440 < th dose independent rect. 6 8
153 596.82 radiation 1 720 < th dose independent rect. 8 19
201 598.81 radiation 10 1440 < th dose dependent rect. 8 15
205 598.84 radiation 10 1440 < th dose dependent rect. 8 20
244 599.92 humidity 80 1440 > th dose independent rect. 6 9
254 600.13 wind 5 4320 < th dose independent rect. 20 2
258 600.16 radiation 1 720 < th dose independent rect. 7 12
272 600.77 humidity 80 14400 > th dose independent rect. 15 9
283 600.91 radiation 10 1440 < th dose dependent sin 20 NA
309 601.42 humidity 80 1440 < th dose independent sin 4 NA
318 601.54 wind 5 4320 > th dose independent rect. 20 1
323 601.67 radiation 10 720 < th dose dependent rect. 14 13
343 602.19 radiation 10 720 < th dose independent rect. 16 1
356 602.56 radiation 20 1440 < th dose dependent rect. 11 1
399 603.83 radiation 20 1440 < th dose dependent rect. 11 6
400 603.84 radiation 1 1440 > th dose independent rect. 9 1
411 604.07 humidity 80 14400 < th dose independent rect. 16 7
429 604.48 radiation 10 1440 > th dose independent rect. 11 23
440 604.74 radiation 10 1440 > th dose independent rect. 8 23
443 604.80 humidity 80 4320 < th dose independent rect. 22 1
450 604.91 humidity 60 14400 > th dose independent rect. 21 11
452 605.00 radiation 10 1440 > th dose independent rect. 6 10
468 605.06 radiation 10 1440 > th dose independent sin 1 NA
518 605.42 humidity 80 1440 > th dose independent sin 3 NA
521 605.43 radiation 1 1440 < th dose independent rect. 11 19
552 605.81 radiation 10 1440 > th dose independent rect. 17 20
567 606.08 radiation 1 1440 > th dose independent rect. 11 19
581 606.22 radiation 10 1440 > th dose independent rect. 14 23
619 606.46 radiation 10 1440 > th dose independent rect. 6 7
689 606.76 radiation 1 1440 < th dose independent sin 22 NA
694 606.80 radiation 1 1440 < th dose independent rect. 11 10
707 606.91 radiation 1 1440 < th dose independent rect. 11 13
746 607.12 humidity 60 14400 > th dose dependent rect. 14 12
756 607.20 radiation 10 1440 > th dose independent no NA NA
881 607.49 humidity 90 14400 < th dose dependent rect. 21 2
913 607.69 humidity 80 14400 > th dose independent sin 16 NA
932 607.80 humidity 60 14400 < th dose independent rect. 6 1
934 607.80 humidity 60 14400 < th dose independent rect. 20 1
936 607.80 radiation 20 14400 > th dose independent rect. 17 1
989 607.80 humidity 60 14400 < th dose dependent rect. 6 1
991 607.80 humidity 60 14400 < th dose dependent rect. 20 1
993 607.80 radiation 20 14400 > th dose dependent rect. 17 1