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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0685600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.0156) R2 : 0.0038
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0435 (0.0329) R2dN8 : 0.00491 R2N8 : 0.0038
σ : 0.295
deviance : 39.86
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
39.24 0.294 2.94 0.0228 0.0131 0.0865 -0.13 -0.204 0.0927 14 24.86 382 -- --
39.35 0.292 2.94 -0.0262 0.0117 0.087 -0.0919 -- 0.0713 13.1 24.8 416 -- --
39.29 0.292 2.94 0.00811 0.0127 0.0879 -- -0.174 0.0887 14 25 389 -- --
39.36 0.292 2.94 -0.0428 0.0174 0.0834 -- -- 0.0738 16.1 24.97 389 -- --
39.3 0.292 2.94 0.00655 -- 0.0843 -- -0.172 0.0867 -- 25 389 -- --
39.64 0.295 2.95 -0.0636 0.0307 -- -0.114 -- 0.0357 8.5 -- -- -- --
39.67 0.295 2.95 -0.0678 0.0355 -- -- -- 0.0354 6.88 -- -- -- --
39.38 0.292 2.94 -0.0442 -- 0.0775 -- -- 0.0711 -- 24.89 406 -- --
39.41 0.292 2.94 -- 0.0219 0.0919 -- -- 0.0803 16.4 25 389 -- --
39.74 0.295 2.95 -0.067 -- -- -- -- 0.036 -- -- -- -- --
39.79 0.295 2.95 -- 0.0347 -- -- -- 0.0429 7 -- -- -- --
39.43 0.292 2.94 -- -- 0.0829 -- -- 0.0775 -- 24.84 420 -- --
39.86 0.295 2.95 -- -- -- -- -- 0.0435 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 37.87 wind 5.0 90 > th dose dependent rect. 8 2
12 37.92 wind 7.0 30 > th dose independent rect. 9 1
171 38.41 humidity 90.0 30 < th dose independent rect. 20 1
172 38.41 humidity 90.0 30 < th dose dependent rect. 20 1
173 38.41 radiation 10.0 1440 < th dose dependent rect. 21 1
175 38.42 wind 3.0 30 > th dose independent rect. 20 1
176 38.42 temperature 20.0 30 > th dose independent rect. 20 1
177 38.42 temperature 10.0 1440 > th dose independent rect. 21 1
180 38.42 temperature 30.0 1440 < th dose independent rect. 21 1
184 38.42 humidity 50.0 1440 > th dose independent rect. 21 1
190 38.42 atmosphere 1005.0 30 > th dose independent rect. 20 1
191 38.42 atmosphere 995.0 1440 > th dose independent rect. 21 1
192 38.42 radiation 1.0 1440 < th dose independent rect. 21 1
212 38.42 humidity 90.0 90 > th dose independent rect. 8 2
214 38.42 temperature 10.0 1440 > th dose independent rect. 22 23
217 38.42 wind 1.0 30 > th dose dependent rect. 20 1
225 38.43 wind 5.0 30 < th dose independent rect. 20 1
228 38.43 temperature 10.0 30 > th dose independent rect. 20 1
231 38.43 temperature 30.0 30 < th dose independent rect. 20 1
233 38.43 humidity 50.0 30 > th dose independent rect. 20 1
237 38.43 atmosphere 995.0 30 > th dose independent rect. 20 1
239 38.43 atmosphere 1010.0 30 < th dose independent rect. 20 1
241 38.43 radiation 1.0 30 < th dose independent rect. 20 1
246 38.43 precipitation 0.1 30 < th dose independent rect. 20 1
247 38.43 temperature 10.0 30 > th dose independent rect. 21 23
248 38.43 wind 9.0 30 < th dose dependent rect. 20 1
249 38.43 temperature 10.0 30 > th dose dependent rect. 20 1
253 38.43 atmosphere 995.0 30 > th dose dependent rect. 20 1
257 38.43 radiation 1.0 30 < th dose dependent rect. 20 1
269 38.43 precipitation 0.1 30 < th dose dependent rect. 20 1
276 38.44 wind 9.0 30 < th dose independent rect. 21 23
279 38.44 humidity 50.0 30 > th dose dependent rect. 20 1
282 38.44 atmosphere 1015.0 30 < th dose dependent rect. 20 1
297 38.46 temperature 30.0 30 < th dose dependent rect. 20 1
300 38.46 humidity 90.0 90 > th dose dependent rect. 8 2
339 38.50 atmosphere 995.0 30 > th dose independent rect. 21 23
346 38.51 wind 9.0 90 > th dose dependent rect. 21 13
380 38.57 precipitation 0.1 30 < th dose independent rect. 21 23
383 38.57 atmosphere 1005.0 90 < th dose dependent rect. 24 1
389 38.57 precipitation 0.1 30 < th dose dependent rect. 21 23
390 38.58 atmosphere 1005.0 10 < th dose dependent rect. 24 2
399 38.59 precipitation 0.1 90 > th dose independent rect. 10 4
414 38.62 radiation 10.0 90 < th dose independent rect. 8 1
418 38.62 atmosphere 1005.0 10 < th dose dependent rect. 2 1
422 38.62 precipitation 0.1 90 > th dose dependent rect. 10 4
427 38.63 temperature 25.0 720 < th dose independent rect. 23 2
430 38.63 radiation 10.0 90 < th dose dependent rect. 8 1
433 38.63 wind 1.0 30 > th dose dependent rect. 20 15
450 38.67 atmosphere 1005.0 270 < th dose independent rect. 22 1
481 38.69 temperature 10.0 10 > th dose dependent rect. 21 23
494 38.71 temperature 25.0 1440 > th dose independent rect. 23 2
507 38.72 temperature 25.0 1440 > th dose dependent rect. 22 4
522 38.74 humidity 90.0 10 < th dose independent rect. 11 9
530 38.74 temperature 25.0 720 > th dose dependent rect. 21 11
532 38.75 precipitation 0.1 1440 < th dose independent rect. 21 1
535 38.75 wind 3.0 30 > th dose independent rect. 20 15
537 38.75 precipitation 0.1 1440 < th dose dependent rect. 21 1
570 38.78 humidity 90.0 90 > th dose dependent rect. 10 4
579 38.79 temperature 25.0 1440 > th dose independent rect. 23 9
584 38.79 temperature 20.0 30 > th dose dependent rect. 1 1
602 38.80 temperature 10.0 10 > th dose dependent rect. 11 9
613 38.81 humidity 50.0 30 > th dose independent rect. 21 23
628 38.82 humidity 90.0 90 > th dose independent rect. 10 4
633 38.82 temperature 25.0 1440 < th dose independent rect. 23 9
659 38.83 precipitation 0.1 720 < th dose independent rect. 17 16
670 38.83 precipitation 0.1 720 < th dose dependent rect. 17 16
693 38.84 wind 9.0 10 < th dose dependent rect. 21 23
785 38.89 wind 7.0 10 > th dose independent sin 7 NA
802 38.89 precipitation 0.1 720 < th dose independent rect. 21 8
808 38.89 wind 7.0 10 < th dose independent rect. 2 18
814 38.89 precipitation 0.1 720 < th dose dependent rect. 21 8
818 38.89 temperature 10.0 10 > th dose dependent rect. 2 18
820 38.89 radiation 20.0 30 < th dose dependent rect. 21 23
825 38.90 temperature 10.0 720 > th dose independent rect. 9 8
826 38.90 temperature 15.0 90 > th dose independent rect. 11 8
829 38.90 atmosphere 1015.0 720 < th dose independent rect. 9 8
839 38.90 temperature 10.0 720 > th dose independent rect. 17 16
840 38.90 temperature 30.0 10 < th dose independent rect. 20 16
850 38.90 radiation 1.0 720 < th dose dependent rect. 21 8
861 38.91 atmosphere 995.0 720 > th dose independent rect. 9 8
867 38.91 atmosphere 995.0 720 > th dose independent rect. 17 16
891 38.92 temperature 25.0 90 > th dose independent rect. 22 8
896 38.92 wind 7.0 10 < th dose independent rect. 2 14
909 38.92 wind 1.0 90 > th dose dependent rect. 23 12
914 38.93 wind 3.0 30 > th dose independent rect. 20 4
927 38.93 atmosphere 1015.0 30 < th dose independent rect. 21 23
971 38.94 temperature 10.0 720 > th dose independent rect. 21 8
974 38.94 humidity 50.0 720 > th dose independent rect. 21 8
977 38.94 atmosphere 995.0 720 > th dose independent rect. 21 8
978 38.94 radiation 20.0 720 < th dose independent rect. 21 8
992 38.94 temperature 10.0 720 > th dose independent rect. 5 16