Os07g0685400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0685400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.15 | 0.266 | 10.8 | 2.42 | 0.372 | -0.837 | -0.224 | 2.21 | 0.738 | 18 | 21.49 | 1193 | -- | -- |
| 38.43 | 0.289 | 10.8 | 1.91 | 0.389 | -0.64 | -0.296 | -- | 0.606 | 17.1 | 18.29 | 7074 | -- | -- |
| 32.23 | 0.264 | 10.8 | 2.46 | 0.365 | -0.833 | -- | 2.32 | 0.742 | 17.9 | 21.95 | 1237 | -- | -- |
| 38.33 | 0.288 | 10.8 | 1.96 | 0.388 | -0.78 | -- | -- | 0.587 | 17.3 | 15.59 | 5475 | -- | -- |
| 38.88 | 0.29 | 10.8 | 2.47 | -- | -0.871 | -- | 2.33 | 0.74 | -- | 22.22 | 1275 | -- | -- |
| 49.45 | 0.33 | 10.9 | 1.57 | 0.416 | -- | -0.294 | -- | 0.413 | 16.9 | -- | -- | -- | -- |
| 49.67 | 0.33 | 10.9 | 1.57 | 0.414 | -- | -- | -- | 0.412 | 16.9 | -- | -- | -- | -- |
| 42.46 | 0.303 | 10.8 | 1.86 | -- | -0.978 | -- | -- | 0.577 | -- | 4.275 | 1258 | -- | -- |
| 80.73 | 0.418 | 11 | -- | 0.403 | 0.918 | -- | -- | -0.0263 | 16.9 | 14.92 | 47520 | -- | -- |
| 58.7 | 0.358 | 10.9 | 1.55 | -- | -- | -- | -- | 0.401 | -- | -- | -- | -- | -- |
| 114.65 | 0.501 | 10.9 | -- | 0.386 | -- | -- | -- | 0.237 | 17.1 | -- | -- | -- | -- |
| 89.72 | 0.441 | 11 | -- | -- | 0.885 | -- | -- | -0.0585 | -- | 15.9 | 47520 | -- | -- |
| 122.48 | 0.517 | 10.9 | -- | -- | -- | -- | -- | 0.228 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.79 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 5 | 31.80 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 5 |
| 56 | 32.07 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 19 |
| 94 | 32.19 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 184 | 32.57 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 9 |
| 192 | 32.59 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 354 | 32.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 22 |
| 395 | 33.04 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 20 |
| 444 | 33.09 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 487 | 33.17 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 502 | 33.18 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 517 | 33.20 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 565 | 33.28 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 726 | 33.48 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 779 | 33.51 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 809 | 33.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 810 | 33.55 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 878 | 33.62 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 932 | 33.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 933 | 33.69 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 10 |
| 964 | 33.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 967 | 33.73 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 10 |