Os07g0684800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NAM / CUC2-like protein.
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Os07g0684800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NAM / CUC2-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 96.5 | 0.462 | 10.6 | 0.597 | 1.6 | 0.954 | 1.01 | 5.53 | 0.524 | 11.7 | 24.97 | 27518 | 7.85 | -- |
| 129.97 | 0.531 | 10.7 | 0.481 | 1.62 | 1.86 | 0.388 | -- | 0.581 | 11.4 | 10.16 | 25977 | 8.95 | -- |
| 97.76 | 0.46 | 10.6 | 0.642 | 1.58 | 0.848 | -- | 5.58 | 0.518 | 11.6 | 26.72 | 27377 | 8.82 | -- |
| 104.18 | 0.475 | 10.7 | 1.15 | 1.17 | 2.31 | -- | -- | 1.03 | 11.6 | 5.067 | 25819 | 7.18 | -- |
| 168.52 | 0.605 | 10.5 | 0.000983 | -- | 2.88 | -- | 6.37 | 0.526 | -- | 160 | 30119 | 6.76 | -- |
| 205.86 | 0.673 | 10.8 | 1.48 | 1.53 | -- | 0.356 | -- | 0.324 | 11.7 | -- | -- | -- | -- |
| 206.4 | 0.673 | 10.8 | 1.49 | 1.53 | -- | -- | -- | 0.326 | 11.7 | -- | -- | -- | -- |
| 133.92 | 0.539 | 10.6 | 2.93 | -- | 3.6 | -- | -- | 1.52 | -- | 3.432 | 26974 | 2.76 | -- |
| 119.11 | 0.508 | 10.7 | -- | 1.38 | 2.63 | -- | -- | 0.844 | 12.2 | 8.072 | 31595 | 7.98 | -- |
| 353.41 | 0.878 | 10.8 | 1.45 | -- | -- | -- | -- | 0.308 | -- | -- | -- | -- | -- |
| 265.26 | 0.762 | 10.8 | -- | 1.51 | -- | -- | -- | 0.159 | 11.6 | -- | -- | -- | -- |
| 199.44 | 0.658 | 10.7 | -- | -- | 3.15 | -- | -- | 0.746 | -- | 7.794 | 32876 | 8.04 | -- |
| 408.94 | 0.944 | 10.8 | -- | -- | -- | -- | -- | 0.147 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 96.02 | temperature | 25 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 2 | 96.31 | temperature | 25 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 11 | 97.49 | temperature | 25 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 12 | 97.52 | humidity | 80 | 43200 | > th | dose independent | sin | 18 | NA |
| 21 | 97.74 | humidity | 80 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 23 | 97.84 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 10 |
| 25 | 97.86 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 13 |
| 28 | 97.93 | humidity | 80 | 43200 | < th | dose independent | sin | 18 | NA |
| 29 | 97.96 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 15 |
| 31 | 98.03 | humidity | 80 | 43200 | < th | dose independent | rect. | 11 | 13 |
| 36 | 98.09 | humidity | 80 | 43200 | < th | dose independent | rect. | 10 | 15 |
| 37 | 98.12 | humidity | 80 | 43200 | > th | dose independent | rect. | 14 | 8 |
| 50 | 98.22 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 10 |
| 78 | 98.54 | humidity | 70 | 43200 | > th | dose dependent | rect. | 16 | 7 |
| 91 | 98.69 | humidity | 70 | 43200 | > th | dose dependent | rect. | 14 | 10 |
| 112 | 98.88 | temperature | 10 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 113 | 98.88 | temperature | 30 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 138 | 99.03 | humidity | 70 | 43200 | > th | dose dependent | sin | 17 | NA |
| 144 | 99.05 | temperature | 25 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 177 | 99.24 | humidity | 70 | 43200 | > th | dose dependent | rect. | 10 | 14 |
| 288 | 99.82 | radiation | 1 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 296 | 99.85 | radiation | 1 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 311 | 99.92 | temperature | 25 | 43200 | > th | dose dependent | sin | 12 | NA |
| 322 | 99.98 | temperature | 25 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 360 | 100.16 | temperature | 30 | 43200 | < th | dose independent | rect. | 14 | 20 |
| 363 | 100.17 | temperature | 30 | 43200 | > th | dose independent | rect. | 14 | 20 |
| 368 | 100.20 | temperature | 25 | 43200 | > th | dose independent | sin | 13 | NA |
| 373 | 100.22 | temperature | 25 | 43200 | > th | dose independent | rect. | 15 | 16 |
| 374 | 100.22 | temperature | 25 | 43200 | < th | dose independent | rect. | 15 | 16 |
| 406 | 100.37 | temperature | 25 | 43200 | < th | dose independent | sin | 13 | NA |
| 431 | 100.44 | temperature | 30 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 435 | 100.45 | temperature | 30 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 442 | 100.47 | temperature | 10 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 537 | 100.70 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 538 | 100.71 | humidity | 80 | 43200 | > th | dose independent | rect. | 4 | 18 |
| 561 | 100.76 | temperature | 30 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 590 | 100.83 | radiation | 1 | 43200 | < th | dose independent | rect. | 24 | 6 |
| 596 | 100.84 | radiation | 1 | 43200 | < th | dose independent | rect. | 2 | 4 |
| 642 | 100.92 | temperature | 30 | 43200 | < th | dose independent | rect. | 7 | 9 |
| 702 | 101.00 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 891 | 101.21 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 930 | 101.29 | temperature | 30 | 43200 | < th | dose independent | sin | 3 | NA |
| 993 | 101.37 | temperature | 30 | 43200 | > th | dose independent | sin | 3 | NA |