Os07g0684500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0684500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, unclassifiable transcript.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 160.86 | 0.596 | 7.44 | -1.08 | 1.69 | 1.97 | 0.483 | -1.77 | 0.132 | 5.58 | 29.45 | 98 | -- | -- |
| 165 | 0.598 | 7.47 | -1.32 | 1.73 | 1.93 | 0.246 | -- | 0.0425 | 5.54 | 29.33 | 98 | -- | -- |
| 161.34 | 0.592 | 7.44 | -1.1 | 1.67 | 2.01 | -- | -1.64 | 0.122 | 5.59 | 29.86 | 103 | -- | -- |
| 164.53 | 0.597 | 7.47 | -1.38 | 1.66 | 2.03 | -- | -- | 0.0645 | 5.59 | 29.13 | 113 | -- | -- |
| 263.46 | 0.756 | 7.41 | -0.642 | -- | 3.63 | -- | -2.46 | 0.352 | -- | 32.95 | 215 | -- | -- |
| 218.8 | 0.693 | 7.56 | -1.87 | 2.2 | -- | 0.382 | -- | -0.348 | 4.9 | -- | -- | -- | -- |
| 219.18 | 0.693 | 7.56 | -1.87 | 2.21 | -- | -- | -- | -0.35 | 4.9 | -- | -- | -- | -- |
| 265.9 | 0.759 | 7.46 | -1.01 | -- | 3.47 | -- | -- | 0.267 | -- | 31.62 | 206 | -- | -- |
| 208.69 | 0.673 | 7.42 | -- | 1.53 | 2.57 | -- | -- | 0.318 | 5.82 | 28.96 | 115 | -- | -- |
| 475.67 | 1.02 | 7.58 | -1.79 | -- | -- | -- | -- | -0.293 | -- | -- | -- | -- | -- |
| 311.83 | 0.826 | 7.51 | -- | 2.17 | -- | -- | -- | -0.141 | 4.93 | -- | -- | -- | -- |
| 290.77 | 0.794 | 7.42 | -- | -- | 3.75 | -- | -- | 0.454 | -- | 31.04 | 216 | -- | -- |
| 560.53 | 1.11 | 7.54 | -- | -- | -- | -- | -- | -0.0943 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 150.81 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 3 | 153.06 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 21 |
| 22 | 156.30 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 33 | 157.66 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 35 | 158.01 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 39 | 158.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 41 | 158.21 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 53 | 158.87 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 80 | 160.47 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 84 | 160.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 92 | 160.91 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 105 | 161.51 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 109 | 161.69 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 110 | 161.70 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 15 |
| 147 | 162.82 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 182 | 163.44 | humidity | 80 | 43200 | < th | dose independent | rect. | 1 | 9 |
| 197 | 163.71 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 21 |
| 203 | 163.78 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 228 | 164.27 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 248 | 164.59 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 258 | 164.75 | humidity | 80 | 43200 | > th | dose independent | rect. | 2 | 7 |
| 261 | 164.84 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 269 | 164.93 | humidity | 80 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 277 | 165.06 | humidity | 80 | 43200 | < th | dose independent | sin | 9 | NA |
| 279 | 165.08 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 289 | 165.15 | humidity | 80 | 43200 | < th | dose dependent | rect. | 19 | 13 |
| 333 | 165.72 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 382 | 166.23 | humidity | 80 | 43200 | < th | dose dependent | sin | 9 | NA |
| 397 | 166.37 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 398 | 166.38 | humidity | 80 | 43200 | > th | dose independent | sin | 9 | NA |
| 404 | 166.46 | temperature | 20 | 90 | > th | dose dependent | rect. | 22 | 23 |
| 428 | 166.67 | humidity | 80 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 497 | 167.43 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 20 |
| 516 | 167.61 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 18 |
| 558 | 168.16 | humidity | 90 | 43200 | < th | dose dependent | rect. | 3 | 6 |
| 598 | 168.55 | humidity | 90 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 608 | 168.71 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 639 | 169.05 | wind | 1 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 671 | 169.33 | humidity | 50 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 675 | 169.35 | humidity | 80 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 717 | 169.68 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 20 |
| 729 | 169.78 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 16 |
| 735 | 169.85 | humidity | 90 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 745 | 169.94 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 757 | 170.01 | wind | 5 | 43200 | < th | dose dependent | rect. | 8 | 13 |
| 759 | 170.04 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 776 | 170.15 | wind | 1 | 43200 | > th | dose dependent | rect. | 14 | 2 |
| 790 | 170.22 | wind | 5 | 43200 | < th | dose dependent | rect. | 8 | 10 |
| 796 | 170.26 | wind | 5 | 43200 | < th | dose dependent | rect. | 6 | 15 |
| 799 | 170.28 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 805 | 170.32 | wind | 9 | 43200 | < th | dose dependent | rect. | 14 | 2 |
| 826 | 170.45 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 838 | 170.52 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 15 |
| 862 | 170.61 | wind | 3 | 43200 | > th | dose independent | rect. | 8 | 13 |
| 868 | 170.62 | wind | 1 | 43200 | > th | dose dependent | rect. | 12 | 9 |
| 886 | 170.69 | wind | 3 | 43200 | < th | dose independent | rect. | 8 | 9 |
| 889 | 170.69 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 10 |
| 895 | 170.71 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 12 |
| 902 | 170.73 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 12 |
| 906 | 170.74 | wind | 9 | 43200 | < th | dose dependent | rect. | 12 | 9 |
| 918 | 170.78 | wind | 5 | 43200 | < th | dose dependent | sin | 22 | NA |
| 946 | 170.90 | humidity | 80 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 960 | 170.93 | wind | 1 | 43200 | > th | dose dependent | rect. | 12 | 6 |
| 978 | 170.97 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 990 | 170.99 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 996 | 171.01 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 997 | 171.01 | wind | 9 | 43200 | < th | dose dependent | rect. | 12 | 6 |