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Os07g0684300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.14 (0.0374) R2 : 0.685
β1 : -4.08 (0.138) R2dD : 0.643 R2D : 0.513
β2 : 2.72 (0.183) R2dC : 0.621 R2C : -0.515
β3 : 3.07 (0.203) R2dE : 0.649 R2E : -0.527
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.361 (0.0811) R2dN8 : 0.0193 R2N8 : -0.0405
σ : 0.694
deviance : 222.11
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C
peak time of C : 2.21
E
wheather : temperature
threshold : 1.7
memory length : 219
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.98
open length of G : 16

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
217.53 0.693 6.18 -4.41 2.61 3.07 -1.79 -3.25 -0.461 2.32 5.349 231 2.88 16.1
222.34 0.694 6.16 -4.06 2.62 3.03 0.11 -- -0.388 2.13 3.189 216 2.87 16.2
220.42 0.691 6.16 -4.3 2.7 3.15 -- -1.38 -0.448 2.31 4.974 226 2.93 16.1
222.11 0.694 6.14 -4.08 2.72 3.07 -- -- -0.361 2.21 1.7 219 2.98 16
269.68 0.765 6.2 -4.71 -- 1.9 -- -0.961 -0.511 -- 6.65 3016 2.75 16
318.92 0.837 6.07 -3.73 0.563 -- -0.317 -- -0.115 5.65 -- -- -- --
319.16 0.837 6.07 -3.73 0.561 -- -- -- -0.114 5.64 -- -- -- --
269.26 0.764 6.16 -4.52 -- 2.05 -- -- -0.452 -- 6.676 3080 1.51 17.5
636.41 1.17 6.03 -- 1.8 1.93 -- -- 0.189 1.82 -19.22 179 3.02 16.5
335.49 0.856 6.08 -3.71 -- -- -- -- -0.1 -- -- -- -- --
685.23 1.22 5.97 -- 0.503 -- -- -- 0.301 5.96 -- -- -- --
681.49 1.22 5.96 -- -- -0.837 -- -- 0.44 -- 0.3905 4879 2.73 18.9
698.33 1.23 5.98 -- -- -- -- -- 0.311 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 220.69 temperature 10.0 270 > th dose dependent rect. 3 16
41 241.49 temperature 15.0 270 > th dose independent rect. 3 15
42 241.69 temperature 30.0 270 < th dose dependent rect. 7 19
46 242.36 atmosphere 995.0 90 > th dose dependent rect. 19 8
58 244.49 atmosphere 1000.0 90 > th dose independent rect. 19 8
62 244.58 temperature 10.0 270 > th dose dependent rect. 12 21
70 245.51 atmosphere 995.0 10 > th dose dependent rect. 20 8
75 245.64 temperature 10.0 720 > th dose dependent rect. 21 18
89 246.84 temperature 15.0 720 > th dose dependent rect. 3 6
90 246.86 temperature 10.0 270 > th dose dependent rect. 1 7
91 246.95 temperature 15.0 720 > th dose dependent sin 5 NA
94 247.03 temperature 10.0 720 > th dose dependent rect. 23 16
107 247.51 temperature 10.0 720 > th dose dependent rect. 3 8
108 247.55 temperature 10.0 270 > th dose dependent rect. 12 8
110 247.81 temperature 20.0 270 > th dose independent rect. 13 6
115 248.06 atmosphere 1000.0 10 > th dose independent rect. 20 8
130 248.63 radiation 1.0 270 < th dose dependent rect. 18 9
142 248.97 temperature 20.0 30 > th dose independent rect. 14 6
148 249.15 wind 3.0 270 > th dose independent rect. 12 7
162 249.53 temperature 15.0 720 > th dose dependent rect. 21 14
172 249.70 wind 9.0 90 < th dose independent rect. 3 16
182 249.90 precipitation 0.1 270 < th dose independent rect. 3 15
183 249.90 precipitation 0.1 270 < th dose dependent rect. 3 15
187 250.05 temperature 30.0 720 < th dose dependent sin 6 NA
190 250.14 radiation 1.0 270 < th dose independent rect. 18 9
196 250.32 precipitation 0.1 270 < th dose independent rect. 14 17
197 250.32 precipitation 0.1 270 < th dose dependent rect. 14 17
216 250.65 wind 1.0 270 > th dose dependent rect. 13 6
218 250.68 temperature 30.0 720 < th dose dependent rect. 19 17
229 250.91 wind 9.0 270 < th dose independent rect. 14 17
247 251.17 temperature 10.0 270 > th dose independent rect. 7 7
248 251.17 atmosphere 995.0 270 > th dose independent rect. 7 7
249 251.17 atmosphere 1015.0 270 < th dose independent rect. 7 7
250 251.17 temperature 10.0 270 > th dose independent rect. 14 17
265 251.39 temperature 10.0 270 > th dose independent rect. 18 9
266 251.39 humidity 50.0 270 > th dose independent rect. 18 9
271 251.39 atmosphere 1015.0 270 < th dose independent rect. 3 15
274 251.40 wind 9.0 270 < th dose independent rect. 18 9
278 251.46 precipitation 0.1 90 < th dose independent rect. 19 8
279 251.46 precipitation 0.1 90 < th dose dependent rect. 19 8
285 251.59 precipitation 0.1 270 < th dose independent rect. 7 7
286 251.59 precipitation 0.1 270 < th dose dependent rect. 7 7
308 251.92 radiation 1.0 270 < th dose dependent rect. 5 22
321 252.05 temperature 10.0 30 > th dose dependent rect. 14 19
329 252.16 atmosphere 1000.0 270 > th dose independent rect. 19 18
337 252.27 wind 9.0 270 < th dose independent rect. 7 7
349 252.36 temperature 30.0 90 < th dose independent rect. 19 8
388 252.65 temperature 30.0 720 < th dose dependent rect. 1 12
389 252.66 temperature 10.0 90 > th dose dependent rect. 3 6
395 252.71 radiation 30.0 270 < th dose independent rect. 1 7
413 252.98 temperature 30.0 270 < th dose independent rect. 7 7
422 253.15 temperature 30.0 270 < th dose dependent rect. 7 8
429 253.20 temperature 10.0 10 > th dose dependent rect. 16 17
432 253.23 temperature 10.0 1440 > th dose dependent rect. 6 1
433 253.23 temperature 30.0 720 < th dose dependent rect. 1 10
434 253.23 temperature 15.0 1440 > th dose dependent rect. 16 17
459 253.40 temperature 10.0 1440 > th dose dependent rect. 5 3
522 253.82 precipitation 0.1 270 < th dose independent rect. 1 7
523 253.82 precipitation 0.1 270 < th dose dependent rect. 1 7
550 254.03 temperature 30.0 1440 < th dose dependent rect. 5 3
553 254.05 temperature 15.0 1440 > th dose dependent sin 13 NA
554 254.05 temperature 15.0 1440 > th dose dependent rect. 16 12
561 254.08 wind 1.0 270 > th dose dependent rect. 14 3
573 254.12 temperature 30.0 1440 < th dose dependent rect. 6 1
581 254.14 radiation 40.0 270 < th dose independent rect. 14 17
592 254.18 temperature 10.0 30 > th dose dependent rect. 14 6
605 254.24 atmosphere 995.0 270 > th dose independent rect. 8 17
619 254.26 wind 7.0 270 < th dose independent rect. 1 7
652 254.38 temperature 10.0 270 > th dose independent rect. 1 7
654 254.38 temperature 30.0 270 < th dose independent rect. 1 7
655 254.38 humidity 50.0 270 > th dose independent rect. 1 7
657 254.38 atmosphere 995.0 270 > th dose independent rect. 1 7
658 254.38 atmosphere 1015.0 270 < th dose independent rect. 1 7
659 254.38 temperature 10.0 270 > th dose independent rect. 8 17
661 254.39 radiation 40.0 30 < th dose independent rect. 4 16
669 254.41 precipitation 0.1 90 < th dose independent rect. 3 6
670 254.41 precipitation 0.1 90 < th dose dependent rect. 3 6
693 254.49 humidity 50.0 270 > th dose independent rect. 13 6
732 254.61 temperature 15.0 720 > th dose dependent rect. 23 10
747 254.65 temperature 30.0 720 < th dose dependent rect. 24 21
763 254.71 wind 9.0 90 < th dose dependent rect. 19 8
776 254.76 temperature 30.0 1440 < th dose dependent rect. 3 6
792 254.80 wind 9.0 90 < th dose independent rect. 3 6
793 254.80 temperature 10.0 90 > th dose independent rect. 3 6
795 254.80 humidity 50.0 90 > th dose independent rect. 3 6
796 254.80 atmosphere 995.0 90 > th dose independent rect. 3 6
797 254.80 atmosphere 1015.0 90 < th dose independent rect. 3 6
832 254.90 wind 9.0 270 < th dose independent rect. 13 6
842 254.93 wind 9.0 10 < th dose independent rect. 4 16
845 254.93 temperature 20.0 1440 > th dose dependent rect. 16 5
873 255.02 precipitation 0.1 270 < th dose independent rect. 13 6
874 255.02 precipitation 0.1 270 < th dose dependent rect. 13 6
875 255.03 temperature 10.0 270 > th dose independent rect. 13 6
877 255.03 atmosphere 1010.0 270 < th dose independent rect. 13 6
879 255.03 temperature 10.0 270 > th dose independent rect. 19 18
887 255.05 wind 9.0 43200 < th dose independent rect. 19 5
909 255.11 temperature 20.0 1440 > th dose dependent rect. 18 1
912 255.12 temperature 30.0 1440 < th dose dependent sin 11 NA
940 255.18 humidity 50.0 90 > th dose dependent rect. 19 8
942 255.18 temperature 30.0 1440 < th dose dependent rect. 17 11
960 255.21 atmosphere 1015.0 270 < th dose independent rect. 14 17
961 255.21 radiation 1.0 270 < th dose independent rect. 7 19
962 255.21 temperature 15.0 1440 > th dose dependent no NA NA
966 255.22 temperature 15.0 1440 > th dose dependent rect. 23 23