Os07g0683200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to OsNAC6 protein.
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Os07g0683200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to OsNAC6 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1275.12 | 1.68 | 5.24 | -4.85 | 1.65 | 8.8 | 1.5 | 41.9 | 1.15 | 1.6 | 1.769 | 4320 | 17.9 | 11.1 |
| 2552.8 | 2.35 | 5.53 | -3.92 | 1.77 | 8.88 | 1.43 | -- | 1.14 | 1.5 | 4.439 | 4317 | 17.3 | 12 |
| 1257.47 | 1.65 | 4.64 | -4.29 | 1.33 | 7.5 | -- | 43.8 | 1.49 | 2.12 | 3.829 | 4321 | 17.9 | 11.2 |
| 1747.53 | 1.95 | 5.12 | 4.58 | 1.25 | 10.6 | -- | -- | 4.54 | 4.59 | 3.103 | 47520 | 17.5 | 11.4 |
| 1342.69 | 1.71 | 4.6 | -3.19 | -- | 7.45 | -- | 43.4 | 1.78 | -- | 4.316 | 4324 | 17.9 | 11.1 |
| 3429.18 | 2.75 | 5.92 | 3.22 | 1.19 | -- | 0.684 | -- | 1.31 | 0.813 | -- | -- | -- | -- |
| 3431.16 | 2.74 | 5.92 | 3.2 | 1.19 | -- | -- | -- | 1.3 | 0.814 | -- | -- | -- | -- |
| 1528.51 | 1.82 | 5.22 | 9.34 | -- | 8.48 | -- | -- | 5.13 | -- | 0.7584 | 47520 | 17.1 | 11.5 |
| 1970.49 | 2.07 | 5.39 | -- | 1.71 | 9.94 | -- | -- | 3.42 | 1.27 | 4.734 | 47520 | 17.4 | 11.8 |
| 3519.71 | 2.77 | 5.9 | 3.24 | -- | -- | -- | -- | 1.33 | -- | -- | -- | -- | -- |
| 3700.45 | 2.85 | 6 | -- | 1.24 | -- | -- | -- | 0.948 | 0.93 | -- | -- | -- | -- |
| 2090.45 | 2.13 | 5.48 | -- | -- | 9.24 | -- | -- | 3.21 | -- | 4.63 | 47520 | 17.4 | 11.8 |
| 3796.61 | 2.88 | 5.99 | -- | -- | -- | -- | -- | 0.966 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 1106.40 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 11 |
| 12 | 1119.45 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 14 | 1121.55 | temperature | 20 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 15 | 1121.69 | humidity | 90 | 43200 | > th | dose independent | rect. | 15 | 14 |
| 18 | 1122.72 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 16 |
| 35 | 1130.74 | humidity | 90 | 43200 | < th | dose independent | sin | 14 | NA |
| 54 | 1135.29 | temperature | 20 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 63 | 1136.43 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 66 | 1137.21 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 77 | 1139.35 | humidity | 90 | 43200 | > th | dose independent | sin | 14 | NA |
| 86 | 1140.95 | humidity | 90 | 43200 | > th | dose dependent | rect. | 14 | 13 |
| 89 | 1142.01 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 94 | 1142.87 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 116 | 1146.57 | humidity | 90 | 43200 | > th | dose dependent | sin | 16 | NA |
| 209 | 1158.78 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 254 | 1163.28 | temperature | 25 | 14400 | > th | dose dependent | rect. | 9 | 4 |
| 261 | 1163.63 | humidity | 90 | 43200 | > th | dose dependent | rect. | 9 | 19 |
| 281 | 1165.45 | humidity | 80 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 317 | 1168.40 | temperature | 25 | 14400 | > th | dose dependent | rect. | 23 | 15 |
| 326 | 1169.08 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 15 |
| 397 | 1172.52 | temperature | 25 | 14400 | > th | dose dependent | sin | 4 | NA |
| 407 | 1172.98 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 445 | 1175.44 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 483 | 1177.05 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 502 | 1178.02 | temperature | 25 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 516 | 1178.68 | temperature | 25 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 537 | 1179.44 | temperature | 25 | 14400 | > th | dose dependent | rect. | 7 | 19 |
| 599 | 1180.67 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 23 |
| 602 | 1180.76 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 678 | 1182.48 | temperature | 25 | 14400 | > th | dose dependent | rect. | 14 | 23 |
| 731 | 1184.57 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 765 | 1185.85 | temperature | 20 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 774 | 1186.13 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 22 |
| 804 | 1187.67 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 21 |
| 821 | 1188.58 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 833 | 1189.24 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 22 |
| 848 | 1189.64 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 23 |
| 901 | 1191.31 | humidity | 90 | 43200 | > th | dose independent | no | NA | NA |
| 907 | 1191.65 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 19 |
| 929 | 1192.18 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 930 | 1192.23 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 20 |
| 943 | 1192.59 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 23 |
| 997 | 1194.23 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 23 |