Os07g0682800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Apyrase-like protein.
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Os07g0682800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Apyrase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.6 | 0.375 | 9.55 | 0.169 | 0.723 | 5.51 | -0.237 | -14.4 | 0.144 | 0.287 | 0.5 | 171 | -- | -- |
| 72.76 | 0.4 | 9.5 | 0.355 | 0.717 | 1 | -0.137 | -- | 0.11 | 0.227 | 0.5 | 171 | -- | -- |
| 63.85 | 0.372 | 9.55 | 0.177 | 0.721 | 5.44 | -- | -14.3 | 0.143 | 0.269 | 0.4996 | 171 | -- | -- |
| 68.28 | 0.385 | 9.5 | 0.3 | 0.698 | 1.41 | -- | -- | 0.119 | 0.368 | 0.3273 | 172 | -- | -- |
| 96.47 | 0.457 | 9.53 | 0.227 | -- | 4.89 | -- | -11.6 | 0.15 | -- | 0.09175 | 171 | -- | -- |
| 74.06 | 0.403 | 9.51 | 0.373 | 0.725 | -- | -0.0973 | -- | 0.107 | 0.252 | -- | -- | -- | -- |
| 74.1 | 0.403 | 9.5 | 0.377 | 0.726 | -- | -- | -- | 0.107 | 0.239 | -- | -- | -- | -- |
| 99.31 | 0.464 | 9.49 | 0.311 | -- | 1.58 | -- | -- | 0.138 | -- | 0.2376 | 178 | -- | -- |
| 70.48 | 0.391 | 9.51 | -- | 0.706 | 1.56 | -- | -- | 0.0949 | 0.424 | 0.4525 | 172 | -- | -- |
| 107.22 | 0.484 | 9.49 | 0.4 | -- | -- | -- | -- | 0.118 | -- | -- | -- | -- | -- |
| 77.84 | 0.413 | 9.51 | -- | 0.731 | -- | -- | -- | 0.0652 | 0.267 | -- | -- | -- | -- |
| 100.38 | 0.467 | 9.49 | -- | -- | 1.53 | -- | -- | 0.123 | -- | 0.3422 | 406 | -- | -- |
| 111.45 | 0.493 | 9.5 | -- | -- | -- | -- | -- | 0.0738 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.31 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 5 | 60.14 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 9 | 60.34 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 10 | 60.34 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 16 | 60.72 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 17 | 60.72 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 67 | 61.65 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 71 | 61.69 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 83 | 62.22 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 84 | 62.25 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 91 | 62.58 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 93 | 62.75 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 97 | 62.91 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 99 | 62.94 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 101 | 63.00 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 129 | 63.33 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 130 | 63.33 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 136 | 63.37 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 143 | 63.38 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 145 | 63.38 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 175 | 63.51 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 176 | 63.51 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 196 | 63.54 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 205 | 63.56 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 10 |
| 239 | 63.66 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 21 | NA |
| 274 | 63.76 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 291 | 63.80 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 9 |
| 370 | 63.98 | humidity | 80.0 | 1440 | < th | dose independent | sin | 1 | NA |
| 379 | 64.02 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 389 | 64.06 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 428 | 64.16 | humidity | 80.0 | 1440 | > th | dose independent | sin | 0 | NA |
| 429 | 64.16 | radiation | 1.0 | 1440 | < th | dose independent | sin | 20 | NA |
| 430 | 64.16 | precipitation | 0.1 | 30 | > th | dose independent | rect. | 3 | 15 |
| 452 | 64.20 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 466 | 64.24 | precipitation | 0.1 | 30 | > th | dose dependent | rect. | 3 | 15 |
| 483 | 64.27 | precipitation | 0.1 | 30 | > th | dose independent | sin | 1 | NA |
| 486 | 64.27 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 17 | 11 |
| 495 | 64.28 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 16 | 13 |
| 497 | 64.29 | radiation | 1.0 | 1440 | > th | dose independent | sin | 20 | NA |
| 544 | 64.39 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 559 | 64.43 | precipitation | 0.1 | 30 | < th | dose independent | sin | 1 | NA |
| 562 | 64.43 | precipitation | 0.1 | 30 | < th | dose dependent | sin | 1 | NA |
| 588 | 64.51 | precipitation | 0.1 | 30 | > th | dose dependent | sin | 1 | NA |
| 611 | 64.54 | precipitation | 0.1 | 270 | > th | dose independent | sin | 12 | NA |
| 615 | 64.54 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 10 | 19 |
| 675 | 64.66 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 13 | 16 |
| 742 | 64.75 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 10 | 21 |
| 792 | 64.87 | precipitation | 0.1 | 270 | > th | dose dependent | sin | 11 | NA |
| 893 | 65.07 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 17 |
| 896 | 65.08 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 8 | 21 |
| 934 | 65.17 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 8 | 23 |