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Os07g0682500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.48 (0.0337) R2 : 0.56
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.52 (0.105) R2dE : 0.551 R2E : 0.555
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.151 (0.0709) R2dN8 : 0.00566 R2N8 : 0.00915
σ : 0.632
deviance : 184.35
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 33.94
memory length : 910
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 13
open length of G : 5.5

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
177.63 0.626 6.51 0.0124 1.17 1.81 -0.37 -0.397 0.134 23.9 56.31 1159 11.5 2.57
177.83 0.621 6.51 -0.0172 1.16 1.81 -0.476 -- 0.133 23.9 56.19 1153 11.5 2.72
178.04 0.621 6.5 0.0346 1.17 1.82 -- -0.5 0.147 23.8 56.18 1152 11.5 2.72
178.84 0.623 6.51 0.00487 1.17 1.83 -- -- 0.138 23.9 56.19 1152 11.5 2.76
187.67 0.638 6.51 -0.156 -- 2.39 -- -0.51 0.0615 -- 24.73 936 13.2 4.29
250.1 0.741 6.51 -0.294 1.6 -- -0.645 -- 0.188 23.5 -- -- -- --
251.87 0.743 6.51 -0.268 1.6 -- -- -- 0.191 23.5 -- -- -- --
184.06 0.632 6.48 -0.154 -- 2.44 -- -- 0.127 -- 32.62 906 13 5.4
178.84 0.623 6.51 -- 1.17 1.83 -- -- 0.139 23.9 56.28 1152 11.5 2.75
413.43 0.95 6.47 -0.225 -- -- -- -- 0.208 -- -- -- -- --
253.76 0.745 6.5 -- 1.6 -- -- -- 0.221 23.5 -- -- -- --
184.35 0.632 6.48 -- -- 2.52 -- -- 0.151 -- 33.94 910 13 5.5
414.77 0.951 6.47 -- -- -- -- -- 0.233 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 197.69 humidity 50 1440 > th dose dependent rect. 11 3
2 198.03 humidity 90 1440 < th dose dependent rect. 11 3
4 198.12 radiation 10 1440 > th dose independent rect. 8 23
5 198.70 humidity 80 1440 < th dose independent rect. 7 8
6 198.70 radiation 1 43200 < th dose dependent rect. 21 4
7 198.84 radiation 10 1440 > th dose independent rect. 8 9
9 198.94 atmosphere 995 43200 < th dose dependent rect. 14 9
26 199.33 radiation 10 1440 < th dose dependent rect. 9 9
32 200.00 atmosphere 995 43200 < th dose independent rect. 14 1
36 200.23 atmosphere 995 43200 < th dose dependent rect. 14 2
37 200.24 radiation 10 1440 > th dose independent rect. 15 23
39 200.31 radiation 10 1440 < th dose dependent rect. 9 12
44 200.38 radiation 10 1440 < th dose dependent rect. 9 15
49 200.50 radiation 10 1440 < th dose dependent rect. 9 18
57 200.64 radiation 10 1440 > th dose independent sin 22 NA
76 200.90 radiation 30 1440 > th dose dependent rect. 15 1
83 201.02 radiation 10 1440 > th dose independent rect. 6 11
85 201.05 humidity 80 1440 > th dose independent rect. 11 3
99 201.10 radiation 10 1440 > th dose independent rect. 11 23
102 201.17 humidity 80 1440 > th dose independent rect. 7 9
105 201.22 humidity 80 1440 < th dose independent rect. 11 3
106 201.23 radiation 30 1440 > th dose dependent rect. 15 17
141 201.39 radiation 10 1440 > th dose independent no NA NA
209 201.41 atmosphere 995 43200 < th dose independent rect. 11 14
211 201.44 atmosphere 995 43200 < th dose independent rect. 12 12
214 201.58 atmosphere 995 43200 > th dose independent rect. 11 13
219 201.63 atmosphere 995 43200 > th dose independent rect. 10 15
229 201.80 atmosphere 995 43200 < th dose independent rect. 10 16
232 201.84 atmosphere 995 43200 > th dose independent rect. 9 18
233 201.84 radiation 10 1440 > th dose independent rect. 13 23
236 201.87 humidity 60 720 > th dose dependent rect. 11 9
238 201.88 atmosphere 995 43200 < th dose independent sin 18 NA
256 201.92 atmosphere 995 43200 > th dose independent rect. 12 11
262 201.96 humidity 80 1440 < th dose dependent rect. 7 8
279 202.08 atmosphere 995 43200 > th dose independent sin 19 NA
296 202.17 radiation 10 1440 < th dose dependent rect. 13 5
300 202.21 atmosphere 995 43200 > th dose independent rect. 14 1
301 202.21 atmosphere 995 43200 > th dose independent rect. 12 4
302 202.21 atmosphere 1000 43200 < th dose dependent rect. 10 1
307 202.26 radiation 10 1440 < th dose dependent sin 19 NA
308 202.27 radiation 1 43200 < th dose dependent rect. 21 7
311 202.29 atmosphere 1000 43200 < th dose dependent rect. 9 3
337 202.39 atmosphere 1000 43200 < th dose dependent rect. 6 6
340 202.41 radiation 10 1440 > th dose independent rect. 8 6
341 202.41 wind 7 43200 > th dose dependent rect. 19 1
372 202.49 radiation 10 720 < th dose dependent rect. 13 13
376 202.51 radiation 30 1440 < th dose independent rect. 15 17
402 202.62 radiation 10 720 < th dose dependent rect. 15 11
417 202.68 radiation 1 43200 < th dose dependent rect. 24 1
425 202.77 radiation 40 1440 < th dose dependent rect. 15 1
434 202.83 wind 9 43200 > th dose dependent rect. 19 11
454 202.98 atmosphere 995 43200 > th dose independent rect. 2 22
455 202.98 atmosphere 995 43200 > th dose independent rect. 12 23
458 202.99 radiation 30 1440 < th dose independent rect. 15 6
496 203.10 atmosphere 995 43200 > th dose independent rect. 23 20
513 203.14 radiation 1 1440 > th dose dependent rect. 15 1
526 203.19 humidity 50 720 > th dose dependent rect. 10 16
529 203.20 humidity 80 1440 < th dose dependent sin 3 NA
542 203.23 radiation 30 1440 < th dose independent rect. 15 9
545 203.23 atmosphere 995 43200 > th dose independent rect. 14 23
563 203.32 atmosphere 995 43200 > th dose independent no NA NA
588 203.41 radiation 10 1440 < th dose dependent rect. 13 8
611 203.51 atmosphere 995 43200 < th dose independent rect. 12 22
627 203.57 radiation 30 1440 < th dose independent rect. 15 1
646 203.64 humidity 80 1440 < th dose independent sin 1 NA
730 203.88 humidity 80 1440 < th dose dependent rect. 19 20
734 203.89 humidity 90 720 < th dose dependent rect. 12 9
801 204.11 wind 7 43200 > th dose dependent rect. 17 4
853 204.29 wind 7 43200 > th dose independent rect. 17 4
868 204.35 atmosphere 995 43200 > th dose independent rect. 4 13
885 204.36 atmosphere 1000 43200 < th dose dependent sin 2 NA
891 204.37 humidity 50 720 > th dose dependent sin 18 NA
959 204.52 wind 9 43200 > th dose dependent rect. 19 6
986 204.60 atmosphere 995 43200 < th dose independent rect. 3 21
992 204.61 wind 9 43200 > th dose independent rect. 19 4