Os07g0682100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0682100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.65 | 0.381 | 2.9 | -0.0298 | 0.241 | -0.163 | -1.57 | 1.58 | -0.0413 | 11.1 | 0.8251 | 101 | -- | -- |
| 67.54 | 0.386 | 2.92 | -0.126 | 0.118 | 0.065 | -0.355 | -- | -0.075 | 4.58 | 8.341 | 35 | -- | -- |
| 67.43 | 0.385 | 2.91 | -0.125 | 0.214 | -0.109 | -- | 0.19 | -0.0674 | 9.46 | 1.79 | 761 | -- | -- |
| 67.5 | 0.383 | 2.89 | -0.0567 | 0.133 | -0.182 | -- | -- | -0.0259 | 9.31 | 0.1747 | 1839 | -- | -- |
| 67.45 | 0.383 | 2.91 | -0.109 | -- | -0.114 | -- | 0.571 | -0.0658 | -- | 0.54 | 650 | -- | -- |
| 67.79 | 0.386 | 2.92 | -0.125 | 0.119 | -- | -0.297 | -- | -0.0749 | 6.16 | -- | -- | -- | -- |
| 67.93 | 0.386 | 2.91 | -0.127 | 0.123 | -- | -- | -- | -0.0733 | 7.28 | -- | -- | -- | -- |
| 67.59 | 0.383 | 2.89 | -0.105 | -- | -0.216 | -- | -- | -0.0201 | -- | 0.1707 | 3855 | -- | -- |
| 67.21 | 0.382 | 2.91 | -- | 0.109 | -0.336 | -- | -- | -0.0361 | 8.98 | 0.46 | 1502 | -- | -- |
| 68.73 | 0.387 | 2.92 | -0.125 | -- | -- | -- | -- | -0.0712 | -- | -- | -- | -- | -- |
| 68.36 | 0.387 | 2.91 | -- | 0.122 | -- | -- | -- | -0.0591 | 7.35 | -- | -- | -- | -- |
| 67.44 | 0.382 | 2.9 | -- | -- | -0.287 | -- | -- | -0.00523 | -- | 0.53 | 3855 | -- | -- |
| 69.14 | 0.388 | 2.91 | -- | -- | -- | -- | -- | -0.0573 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.77 | wind | 5 | 90 | > th | dose independent | rect. | 24 | 1 |
| 2 | 57.78 | wind | 3 | 90 | > th | dose dependent | rect. | 24 | 2 |
| 15 | 58.83 | wind | 9 | 270 | > th | dose independent | rect. | 21 | 5 |
| 39 | 58.83 | wind | 9 | 270 | > th | dose dependent | rect. | 21 | 5 |
| 88 | 59.26 | wind | 9 | 270 | > th | dose independent | rect. | 21 | 1 |
| 94 | 59.26 | wind | 9 | 270 | > th | dose dependent | rect. | 21 | 1 |
| 151 | 59.27 | wind | 9 | 30 | > th | dose independent | rect. | 1 | 10 |
| 223 | 59.27 | wind | 9 | 30 | > th | dose dependent | rect. | 1 | 10 |
| 479 | 61.55 | wind | 3 | 10 | > th | dose independent | rect. | 1 | 5 |
| 491 | 61.71 | wind | 3 | 90 | > th | dose dependent | rect. | 24 | 7 |
| 495 | 61.77 | wind | 3 | 90 | > th | dose independent | rect. | 24 | 7 |
| 502 | 61.90 | wind | 5 | 10 | > th | dose independent | rect. | 1 | 8 |
| 549 | 62.50 | temperature | 20 | 10 | < th | dose dependent | rect. | 7 | 5 |
| 562 | 62.58 | temperature | 20 | 90 | > th | dose independent | rect. | 4 | 1 |
| 584 | 62.64 | temperature | 20 | 90 | < th | dose dependent | rect. | 6 | 13 |
| 630 | 62.79 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 1 | 1 |
| 631 | 62.79 | humidity | 60 | 1440 | > th | dose independent | rect. | 7 | 2 |
| 668 | 62.94 | humidity | 60 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 687 | 63.06 | humidity | 60 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 688 | 63.07 | humidity | 60 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 702 | 63.07 | humidity | 60 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 721 | 63.10 | temperature | 20 | 10 | < th | dose independent | rect. | 7 | 6 |
| 786 | 63.20 | radiation | 1 | 30 | < th | dose independent | rect. | 4 | 2 |
| 800 | 63.21 | humidity | 60 | 270 | < th | dose independent | rect. | 8 | 1 |
| 826 | 63.21 | humidity | 60 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 889 | 63.33 | humidity | 90 | 10 | < th | dose independent | rect. | 1 | 1 |
| 890 | 63.33 | temperature | 20 | 10 | > th | dose independent | rect. | 24 | 6 |
| 914 | 63.40 | temperature | 20 | 90 | < th | dose independent | rect. | 7 | 2 |
| 920 | 63.40 | radiation | 1 | 30 | < th | dose dependent | rect. | 4 | 2 |
| 928 | 63.43 | temperature | 20 | 90 | < th | dose dependent | rect. | 7 | 2 |
| 947 | 63.46 | humidity | 60 | 30 | < th | dose dependent | rect. | 18 | 16 |
| 951 | 63.47 | humidity | 60 | 30 | < th | dose independent | rect. | 18 | 16 |
| 984 | 63.50 | wind | 5 | 10 | > th | dose independent | rect. | 8 | 1 |
| 987 | 63.50 | wind | 5 | 10 | > th | dose dependent | rect. | 8 | 1 |