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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0681700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycosyl transferase, family 8 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.67 (0.0433) R2 : 0.506
β1 : -1.28 (0.161) R2dD : 0.0743 R2D : 0.000275
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.4 (0.161) R2dE : 0.511 R2E : 0.433
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.167 (0.0933) R2dN8 : 0.00486 R2N8 : -0.0125
σ : 0.808
deviance : 300.79
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 12.58
memory length : 909
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 14.5
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
287.72 0.797 4.65 -0.962 0.667 3.09 -1.68 2.25 -0.0928 18.9 15.67 852 12.4 --
291.06 0.795 4.68 -1.3 0.473 3.4 -1.75 -- -0.188 17.6 15.55 834 12.6 --
293.45 0.798 4.65 -0.931 0.843 2.48 -- 1.5 -0.0651 21.1 19.13 904 12.6 --
292.62 0.797 4.69 -1.16 1.08 2.28 -- -- -0.142 21.2 20.55 912 12.2 --
300.15 0.807 4.66 -1.17 -- 3.38 -- 0.66 -0.14 -- 13.14 891 14.3 --
390.18 0.926 4.65 -0.618 1.82 -- 0.715 -- 0.122 22.7 -- -- -- --
392.24 0.927 4.65 -0.645 1.82 -- -- -- 0.121 22.7 -- -- -- --
300.79 0.808 4.67 -1.28 -- 3.4 -- -- -0.167 -- 12.58 909 14.5 --
325.36 0.84 4.71 -- 1.26 1.98 -- -- -0.0179 21.3 22 854 10.6 --
595.94 1.14 4.61 -0.611 -- -- -- -- 0.131 -- -- -- -- --
403.22 0.939 4.64 -- 1.81 -- -- -- 0.193 22.6 -- -- -- --
340.28 0.859 4.64 -- -- 2.94 -- -- 0.00854 -- 8.308 861 14 --
605.78 1.15 4.59 -- -- -- -- -- 0.198 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 290.75 temperature 20 720 > th dose dependent rect. 16 7
2 290.78 temperature 20 720 > th dose dependent rect. 17 2
3 290.85 temperature 20 720 > th dose dependent rect. 14 10
9 292.26 temperature 15 720 > th dose dependent sin 17 NA
32 294.70 temperature 15 720 > th dose dependent rect. 13 15
55 296.23 temperature 15 720 > th dose dependent rect. 10 15
56 296.24 temperature 15 90 > th dose dependent rect. 15 14
65 296.55 temperature 10 720 > th dose dependent rect. 7 18
142 300.36 temperature 30 720 < th dose dependent rect. 15 8
155 301.00 temperature 30 720 < th dose dependent rect. 17 4
198 302.12 temperature 30 720 < th dose dependent sin 18 NA
201 302.20 temperature 30 720 < th dose dependent rect. 11 12
222 302.71 temperature 25 720 > th dose dependent rect. 17 16
227 302.88 radiation 30 14400 < th dose independent rect. 16 9
230 302.96 radiation 30 14400 < th dose independent rect. 16 12
234 303.04 radiation 30 14400 < th dose independent rect. 16 7
247 303.33 radiation 30 14400 < th dose independent rect. 16 5
248 303.34 temperature 30 90 < th dose dependent rect. 5 22
278 304.08 radiation 30 14400 < th dose independent rect. 16 3
291 304.29 temperature 30 720 < th dose dependent rect. 19 2
297 304.41 radiation 30 1440 < th dose dependent rect. 18 10
308 304.55 radiation 30 14400 < th dose independent rect. 16 1
324 305.09 radiation 1 720 > th dose dependent rect. 18 11
336 305.35 radiation 20 1440 < th dose dependent rect. 18 7
373 306.08 temperature 20 10 > th dose dependent rect. 15 15
407 306.57 radiation 20 1440 < th dose dependent rect. 18 5
440 307.21 radiation 20 1440 < th dose dependent rect. 18 3
462 307.56 temperature 25 720 > th dose independent rect. 7 17
515 308.60 wind 1 1440 < th dose independent rect. 4 2
520 308.76 temperature 25 1440 > th dose dependent rect. 7 1
526 308.99 temperature 25 720 > th dose independent rect. 14 10
529 309.02 temperature 30 720 < th dose independent rect. 16 15
584 309.82 wind 5 43200 > th dose dependent rect. 18 22
590 309.92 radiation 1 720 > th dose dependent rect. 18 1
615 310.10 wind 7 43200 < th dose independent rect. 18 21
626 310.29 wind 7 43200 > th dose independent rect. 18 21
633 310.33 radiation 10 14400 > th dose independent rect. 5 1
699 310.72 wind 5 43200 > th dose independent rect. 23 18
705 310.78 radiation 1 720 > th dose independent rect. 18 11
713 310.83 wind 5 43200 > th dose dependent rect. 23 17
725 310.92 wind 5 43200 > th dose independent rect. 20 21
740 311.06 wind 5 43200 > th dose dependent rect. 10 23
772 311.24 wind 5 43200 > th dose dependent rect. 8 23
773 311.24 wind 5 43200 > th dose dependent rect. 24 23
776 311.26 wind 5 43200 > th dose dependent no NA NA
788 311.31 wind 5 43200 > th dose dependent rect. 2 23
809 311.42 humidity 70 720 > th dose independent rect. 19 8
830 311.52 wind 5 43200 > th dose dependent rect. 13 23
833 311.54 wind 5 43200 < th dose independent rect. 23 18
935 312.02 temperature 25 720 < th dose independent rect. 11 13
942 312.03 radiation 40 14400 > th dose dependent rect. 15 17
997 312.21 wind 5 43200 > th dose dependent sin 2 NA