Os07g0681400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calcium-binding protein CAST.
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Os07g0681400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calcium-binding protein CAST.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 218.52 | 0.695 | 6.01 | -0.319 | 3.15 | -2.15 | 0.621 | 1.88 | -0.425 | 6.97 | 25.2 | 6851 | -- | -- |
| 214.97 | 0.683 | 6 | -0.668 | 3.18 | -2.19 | 0.82 | -- | -0.207 | 7.03 | 23.52 | 8200 | -- | -- |
| 219.34 | 0.69 | 6 | -0.313 | 3.16 | -2.14 | -- | 1.85 | -0.417 | 6.97 | 25.1 | 6907 | -- | -- |
| 215.82 | 0.684 | 6.01 | -0.703 | 3.17 | -2.16 | -- | -- | -0.237 | 7.01 | 23.53 | 8156 | -- | -- |
| 694.82 | 1.23 | 6.11 | -0.197 | -- | -2.28 | -- | 2.3 | -0.453 | -- | 28.4 | 6414 | -- | -- |
| 371.5 | 0.904 | 6.21 | -1.89 | 3.15 | -- | 0.64 | -- | -1.15 | 7.21 | -- | -- | -- | -- |
| 372.59 | 0.904 | 6.21 | -1.88 | 3.15 | -- | -- | -- | -1.15 | 7.2 | -- | -- | -- | -- |
| 409.3 | 0.942 | 6.06 | -0.999 | -- | -2.91 | -- | -- | -0.209 | -- | 25.8 | 535 | -- | -- |
| 226.27 | 0.701 | 5.96 | -- | 3.15 | -2.42 | -- | -- | -0.0498 | 7.08 | 23.5 | 8889 | -- | -- |
| 897.44 | 1.4 | 6.28 | -1.82 | -- | -- | -- | -- | -1.1 | -- | -- | -- | -- | -- |
| 465.37 | 1.01 | 6.16 | -- | 3.13 | -- | -- | -- | -0.944 | 7.24 | -- | -- | -- | -- |
| 431.34 | 0.967 | 6.05 | -- | -- | -3.16 | -- | -- | -0.0601 | -- | 25.8 | 551 | -- | -- |
| 984.7 | 1.46 | 6.24 | -- | -- | -- | -- | -- | -0.896 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 216.85 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 2 | 217.06 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 6 | 217.88 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 9 | 218.10 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 57 | 222.79 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 18 |
| 89 | 223.93 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 2 |
| 92 | 224.04 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 117 | 224.80 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 20 |
| 138 | 225.21 | temperature | 20 | 4320 | > th | dose dependent | sin | 17 | NA |
| 174 | 225.89 | temperature | 20 | 4320 | > th | dose dependent | rect. | 8 | 16 |
| 268 | 226.87 | temperature | 25 | 4320 | < th | dose independent | rect. | 14 | 10 |
| 307 | 227.34 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 18 |
| 319 | 227.46 | temperature | 20 | 14400 | > th | dose independent | sin | 17 | NA |
| 373 | 227.83 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 18 |
| 428 | 228.26 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 14 |
| 474 | 228.49 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 18 |
| 530 | 228.86 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 872 | 230.35 | temperature | 20 | 14400 | < th | dose dependent | rect. | 21 | 2 |
| 945 | 230.75 | temperature | 20 | 14400 | < th | dose independent | sin | 17 | NA |