FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0681200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant acid phosphatase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.84 (0.0338) R2 : 0.0144
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.184 (0.0711) R2dN8 : 0.0187 R2N8 : 0.0144
σ : 0.636
deviance : 185.59
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
175.08 0.622 2.87 -0.23 0.0104 -0.546 0.17 2.48 0.15 20.7 1.19 16 -- --
180.66 0.626 2.83 -0.0881 0.0353 -0.393 -0.319 -- 0.196 5.29 1.098 16 -- --
175.17 0.616 2.87 -0.235 0.016 -0.539 -- 2.46 0.148 0.697 1.199 16 -- --
180.95 0.627 2.84 -0.119 0.0462 -0.389 -- -- 0.177 4.17 1.072 16 -- --
175.18 0.616 2.87 -0.235 -- -0.544 -- 2.47 0.15 -- 1.182 16 -- --
184.01 0.636 2.84 -0.0735 0.154 -- -0.301 -- 0.171 4.54 -- -- -- --
184.25 0.636 2.84 -0.0716 0.151 -- -- -- 0.173 4.26 -- -- -- --
181.04 0.627 2.84 -0.121 -- -0.416 -- -- 0.178 -- 1.073 16 -- --
181.31 0.627 2.84 -- 0.0472 -0.373 -- -- 0.19 4.13 1.039 16 -- --
185.48 0.636 2.84 -0.0656 -- -- -- -- 0.177 -- -- -- -- --
184.38 0.635 2.84 -- 0.15 -- -- -- 0.18 4.27 -- -- -- --
181.41 0.627 2.84 -- -- -0.4 -- -- 0.191 -- 1.087 16 -- --
185.59 0.636 2.84 -- -- -- -- -- 0.184 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 163.91 wind 1.0 30 < th dose independent rect. 2 1
2 163.97 wind 3.0 30 < th dose dependent rect. 2 1
3 164.00 atmosphere 1005.0 30 > th dose independent rect. 2 1
4 164.00 atmosphere 1005.0 30 > th dose dependent rect. 2 1
5 164.04 temperature 20.0 30 > th dose dependent rect. 2 1
12 164.20 temperature 20.0 30 > th dose independent rect. 2 1
16 164.32 humidity 80.0 30 > th dose independent rect. 2 1
21 164.39 temperature 10.0 30 > th dose independent rect. 2 1
23 164.39 temperature 30.0 30 < th dose independent rect. 2 1
24 164.39 humidity 50.0 30 > th dose independent rect. 2 1
28 164.39 atmosphere 1010.0 30 < th dose independent rect. 2 1
30 164.39 radiation 1.0 30 < th dose independent rect. 2 1
35 164.39 precipitation 0.1 30 < th dose independent rect. 2 1
36 164.39 temperature 10.0 30 > th dose independent rect. 3 23
37 164.39 humidity 50.0 30 > th dose dependent rect. 2 1
39 164.39 radiation 1.0 30 < th dose dependent rect. 2 1
44 164.39 precipitation 0.1 30 < th dose dependent rect. 2 1
52 164.92 atmosphere 1015.0 30 < th dose dependent rect. 2 1
57 165.09 temperature 30.0 30 < th dose dependent rect. 2 1
59 165.12 radiation 10.0 43200 < th dose dependent rect. 3 1
66 165.28 wind 9.0 1440 < th dose independent rect. 3 1
67 165.28 temperature 10.0 1440 > th dose independent rect. 3 1
70 165.28 temperature 30.0 1440 < th dose independent rect. 3 1
74 165.28 humidity 50.0 1440 > th dose independent rect. 3 1
83 165.28 atmosphere 995.0 1440 > th dose independent rect. 3 1
84 165.28 radiation 1.0 1440 < th dose independent rect. 3 1
104 165.28 temperature 10.0 1440 > th dose independent rect. 4 23
107 165.28 radiation 1.0 1440 < th dose dependent rect. 3 1
130 165.84 atmosphere 995.0 30 > th dose independent rect. 3 23
131 165.86 wind 1.0 30 > th dose independent rect. 2 1
173 167.73 precipitation 0.1 30 < th dose independent rect. 3 23
174 167.73 precipitation 0.1 30 < th dose dependent rect. 3 23
177 168.86 wind 9.0 30 < th dose independent rect. 3 23
192 171.52 humidity 50.0 30 > th dose independent rect. 3 23
195 171.75 temperature 25.0 270 > th dose independent rect. 23 4
197 172.16 temperature 30.0 30 < th dose independent rect. 3 23
202 172.38 wind 1.0 30 < th dose independent rect. 24 3
205 172.53 temperature 25.0 270 > th dose dependent rect. 23 4
211 172.83 humidity 90.0 90 > th dose independent rect. 14 1
214 172.83 humidity 90.0 90 > th dose dependent rect. 14 1
218 172.87 radiation 1.0 10 < th dose independent rect. 13 3
220 172.88 radiation 1.0 10 < th dose independent rect. 15 1
258 172.96 temperature 25.0 90 < th dose dependent rect. 14 1
263 173.13 wind 3.0 10 < th dose dependent rect. 24 3
288 173.56 humidity 90.0 90 < th dose independent rect. 2 1
305 174.03 wind 1.0 30 < th dose independent rect. 11 16
306 174.03 radiation 1.0 10 < th dose dependent rect. 15 1
318 174.08 wind 1.0 30 > th dose independent rect. 3 23
348 174.44 temperature 25.0 90 < th dose independent rect. 14 1
365 174.58 radiation 10.0 90 < th dose dependent rect. 14 1
382 174.89 humidity 80.0 90 < th dose dependent rect. 2 2
386 174.90 humidity 90.0 10 < th dose dependent rect. 3 1
392 175.01 humidity 80.0 10 < th dose independent rect. 3 1
480 175.66 wind 1.0 10 > th dose independent sin 15 NA
488 175.81 atmosphere 1015.0 30 < th dose independent rect. 3 23
511 176.06 wind 5.0 30 > th dose independent rect. 24 6
518 176.08 wind 5.0 30 > th dose dependent rect. 24 6
524 176.11 wind 5.0 10 > th dose independent rect. 24 4
528 176.11 wind 5.0 10 > th dose dependent rect. 24 4
538 176.17 wind 3.0 10 < th dose dependent rect. 19 8
544 176.19 wind 5.0 10 > th dose independent rect. 24 2
548 176.19 wind 5.0 10 > th dose dependent rect. 24 2
556 176.25 precipitation 0.1 30 > th dose independent rect. 23 1
560 176.25 precipitation 0.1 30 > th dose dependent rect. 23 1
585 176.33 precipitation 0.1 720 > th dose independent rect. 22 1
588 176.33 precipitation 0.1 720 > th dose dependent rect. 22 1
619 176.50 atmosphere 1005.0 90 < th dose dependent rect. 5 1
629 176.53 radiation 40.0 10 < th dose dependent rect. 3 23
658 176.73 temperature 10.0 1440 > th dose independent rect. 13 1
662 176.73 atmosphere 995.0 1440 > th dose independent rect. 13 1
667 176.73 temperature 10.0 1440 > th dose independent rect. 14 23
670 176.75 wind 1.0 10 > th dose independent rect. 21 12
678 176.79 wind 1.0 10 > th dose independent rect. 21 23
686 176.82 wind 1.0 10 > th dose independent rect. 15 23
703 176.88 temperature 25.0 30 > th dose dependent rect. 12 1
710 176.90 atmosphere 1000.0 90 > th dose dependent rect. 3 8
715 176.92 atmosphere 1005.0 30 > th dose dependent rect. 15 1
720 176.92 wind 1.0 30 < th dose dependent rect. 11 16
723 176.94 wind 1.0 10 > th dose independent rect. 6 23
729 176.97 radiation 1.0 10 < th dose independent rect. 6 11
730 176.97 wind 1.0 10 > th dose independent rect. 13 23
740 177.02 temperature 25.0 30 > th dose independent rect. 16 19
742 177.03 atmosphere 1005.0 270 > th dose dependent rect. 12 1
744 177.04 wind 5.0 10 < th dose dependent rect. 19 11
754 177.10 wind 3.0 30 > th dose dependent rect. 12 1
783 177.26 humidity 60.0 30 > th dose independent rect. 12 1
788 177.28 radiation 40.0 30 > th dose independent rect. 12 1
800 177.30 wind 1.0 10 > th dose independent rect. 16 17
805 177.31 wind 3.0 30 < th dose dependent rect. 2 4
807 177.31 radiation 1.0 10 < th dose dependent rect. 6 11
823 177.37 radiation 20.0 30 > th dose dependent rect. 12 1
838 177.41 wind 3.0 30 > th dose independent rect. 12 1
858 177.44 temperature 25.0 30 > th dose independent rect. 22 13
869 177.48 temperature 25.0 30 > th dose independent rect. 12 1
887 177.51 wind 1.0 10 > th dose dependent rect. 22 11
892 177.53 wind 3.0 10 < th dose dependent rect. 23 7
921 177.57 humidity 50.0 30 > th dose dependent rect. 12 1
927 177.58 humidity 90.0 10 > th dose independent rect. 24 3
930 177.59 atmosphere 1010.0 30 < th dose independent rect. 12 1
936 177.62 atmosphere 1005.0 30 > th dose independent rect. 12 1
952 177.67 temperature 25.0 10 > th dose independent rect. 5 1
955 177.67 atmosphere 995.0 30 > th dose dependent rect. 12 1
959 177.69 radiation 30.0 10 < th dose independent rect. 3 23
975 177.72 wind 9.0 30 < th dose independent rect. 12 1
976 177.72 temperature 10.0 30 > th dose independent rect. 12 1
980 177.72 radiation 1.0 30 > th dose independent rect. 12 1
981 177.72 precipitation 0.1 30 < th dose independent rect. 12 1
982 177.72 temperature 10.0 30 > th dose independent rect. 13 23
983 177.72 precipitation 0.1 30 < th dose dependent rect. 12 1
986 177.73 humidity 80.0 30 < th dose independent rect. 12 1
996 177.74 atmosphere 1000.0 270 > th dose dependent rect. 3 5