Os07g0680900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ribosomal protein S6 kinase.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0680900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Ribosomal protein S6 kinase.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.91 | 0.301 | 11.5 | -0.425 | 0.274 | 0.668 | -0.351 | -0.0998 | 0.283 | 20.4 | 13.21 | 62 | -- | -- |
| 40.93 | 0.298 | 11.5 | -0.425 | 0.279 | 0.654 | -0.437 | -- | 0.283 | 20.7 | 13.07 | 62 | -- | -- |
| 41.12 | 0.299 | 11.5 | -0.416 | 0.25 | 0.707 | -- | -0.255 | 0.284 | 19.8 | 12.61 | 62 | -- | -- |
| 41.52 | 0.3 | 11.5 | -0.416 | 0.264 | 0.683 | -- | -- | 0.283 | 20.1 | 12.45 | 62 | -- | -- |
| 43.56 | 0.307 | 11.5 | -0.418 | -- | 0.772 | -- | -0.285 | 0.294 | -- | 11.82 | 50 | -- | -- |
| 48.5 | 0.326 | 11.5 | -0.432 | 0.895 | -- | -0.343 | -- | 0.234 | 23.3 | -- | -- | -- | -- |
| 49 | 0.328 | 11.5 | -0.418 | 0.896 | -- | -- | -- | 0.235 | 23.4 | -- | -- | -- | -- |
| 43.93 | 0.309 | 11.5 | -0.427 | -- | 0.769 | -- | -- | 0.29 | -- | 11.58 | 46 | -- | -- |
| 46.01 | 0.316 | 11.5 | -- | 0.269 | 0.682 | -- | -- | 0.323 | 20.2 | 13.76 | 62 | -- | -- |
| 99.31 | 0.466 | 11.5 | -0.395 | -- | -- | -- | -- | 0.244 | -- | -- | -- | -- | -- |
| 53.61 | 0.343 | 11.5 | -- | 0.892 | -- | -- | -- | 0.282 | 23.3 | -- | -- | -- | -- |
| 48.49 | 0.324 | 11.5 | -- | -- | 0.769 | -- | -- | 0.33 | -- | 13.03 | 27 | -- | -- |
| 103.43 | 0.475 | 11.5 | -- | -- | -- | -- | -- | 0.288 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.34 | radiation | 1.0 | 30 | < th | dose independent | rect. | 5 | 14 |
| 4 | 40.08 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 5 | 14 |
| 5 | 40.09 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 11 | 8 |
| 11 | 40.30 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 12 | 40.37 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 7 | 12 |
| 13 | 40.39 | radiation | 1.0 | 30 | < th | dose independent | rect. | 11 | 8 |
| 20 | 40.50 | radiation | 1.0 | 30 | < th | dose independent | rect. | 13 | 6 |
| 36 | 40.88 | radiation | 1.0 | 30 | > th | dose independent | sin | 23 | NA |
| 37 | 40.88 | radiation | 1.0 | 30 | < th | dose independent | rect. | 15 | 4 |
| 47 | 40.92 | radiation | 1.0 | 30 | < th | dose independent | sin | 23 | NA |
| 75 | 41.37 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 15 | 4 |
| 91 | 41.53 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 8 |
| 100 | 41.62 | radiation | 10.0 | 30 | < th | dose dependent | sin | 23 | NA |
| 138 | 41.85 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 10 | 23 |
| 161 | 41.96 | radiation | 10.0 | 30 | < th | dose dependent | no | NA | NA |
| 164 | 41.97 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 165 | 41.97 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 171 | 42.02 | humidity | 70.0 | 90 | > th | dose independent | rect. | 17 | 2 |
| 172 | 42.02 | radiation | 10.0 | 90 | < th | dose independent | rect. | 21 | 23 |
| 188 | 42.10 | humidity | 70.0 | 90 | > th | dose independent | rect. | 13 | 7 |
| 193 | 42.12 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 198 | 42.16 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 12 | 8 |
| 203 | 42.18 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 205 | 42.20 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 2 |
| 219 | 42.28 | temperature | 30.0 | 90 | < th | dose independent | rect. | 17 | 2 |
| 258 | 42.41 | temperature | 25.0 | 30 | < th | dose independent | rect. | 13 | 7 |
| 273 | 42.45 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 17 | 2 |
| 280 | 42.47 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 295 | 42.53 | radiation | 10.0 | 90 | > th | dose independent | no | NA | NA |
| 297 | 42.53 | radiation | 10.0 | 90 | > th | dose independent | rect. | 6 | 12 |
| 425 | 42.65 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 23 | 20 |
| 428 | 42.66 | temperature | 30.0 | 270 | < th | dose independent | rect. | 15 | 3 |
| 432 | 42.66 | radiation | 10.0 | 90 | > th | dose independent | rect. | 9 | 23 |
| 492 | 42.79 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 17 |
| 549 | 42.89 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 2 | 18 |
| 557 | 42.92 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 577 | 42.97 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 22 | 22 |
| 613 | 43.05 | radiation | 10.0 | 90 | > th | dose independent | rect. | 11 | 23 |
| 616 | 43.05 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 24 | 20 |
| 631 | 43.07 | radiation | 10.0 | 90 | < th | dose independent | rect. | 9 | 23 |
| 644 | 43.09 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 659 | 43.12 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 663 | 43.13 | radiation | 10.0 | 90 | < th | dose independent | rect. | 11 | 21 |
| 668 | 43.14 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 19 | 23 |
| 673 | 43.14 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 675 | 43.15 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 17 | 2 |
| 695 | 43.19 | humidity | 70.0 | 10 | > th | dose dependent | sin | 23 | NA |
| 716 | 43.21 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 20 |
| 736 | 43.24 | radiation | 10.0 | 90 | < th | dose independent | rect. | 23 | 20 |
| 748 | 43.25 | wind | 9.0 | 90 | < th | dose independent | rect. | 19 | 23 |
| 749 | 43.25 | radiation | 10.0 | 90 | < th | dose independent | rect. | 11 | 23 |
| 750 | 43.25 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 17 | 3 |
| 771 | 43.28 | radiation | 10.0 | 90 | < th | dose independent | rect. | 15 | 23 |
| 782 | 43.30 | radiation | 10.0 | 90 | > th | dose independent | rect. | 15 | 23 |
| 792 | 43.31 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 17 | 2 |
| 815 | 43.35 | radiation | 10.0 | 90 | < th | dose independent | no | NA | NA |
| 836 | 43.38 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 899 | 43.46 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 902 | 43.47 | radiation | 10.0 | 90 | < th | dose independent | rect. | 7 | 23 |
| 907 | 43.48 | radiation | 10.0 | 90 | < th | dose independent | rect. | 13 | 23 |
| 929 | 43.50 | wind | 3.0 | 90 | > th | dose dependent | rect. | 18 | 1 |
| 930 | 43.50 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 16 | 4 |
| 943 | 43.52 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 15 | 3 |
| 944 | 43.52 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 967 | 43.57 | humidity | 80.0 | 30 | < th | dose independent | rect. | 7 | 11 |