Os07g0680400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DNA-binding WRKY domain containing protein.
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Os07g0680400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DNA-binding WRKY domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 332.82 | 0.857 | 8.46 | 1.24 | 0.328 | 1.67 | 0.336 | -1.68 | 1.43 | 12.9 | 20 | 3880 | -- | -- |
| 334.37 | 0.852 | 8.39 | 1.44 | 0.332 | 2.15 | 0.42 | -- | 1.51 | 12.9 | 19.6 | 3931 | -- | -- |
| 333.27 | 0.85 | 8.46 | 1.24 | 0.327 | 1.66 | -- | -1.73 | 1.43 | 13.2 | 20.04 | 3879 | -- | -- |
| 335.03 | 0.852 | 8.39 | 1.45 | 0.333 | 2.16 | -- | -- | 1.5 | 13.3 | 19.58 | 3931 | -- | -- |
| 339.92 | 0.859 | 8.46 | 1.26 | -- | 1.59 | -- | -1.76 | 1.44 | -- | 20.07 | 3890 | -- | -- |
| 405.6 | 0.944 | 8.28 | 2.66 | 0.244 | -- | 0.471 | -- | 2.02 | 12.8 | -- | -- | -- | -- |
| 406.52 | 0.944 | 8.28 | 2.68 | 0.245 | -- | -- | -- | 2.02 | 13.1 | -- | -- | -- | -- |
| 341.82 | 0.861 | 8.39 | 1.47 | -- | 2.11 | -- | -- | 1.51 | -- | 19.5 | 3968 | -- | -- |
| 335.84 | 0.854 | 8.46 | -- | 0.29 | 2.74 | -- | -- | 1.17 | 13.4 | 18.4 | 22604 | -- | -- |
| 410.24 | 0.946 | 8.28 | 2.67 | -- | -- | -- | -- | 2.01 | -- | -- | -- | -- | -- |
| 596.14 | 1.14 | 8.34 | -- | 0.202 | -- | -- | -- | 1.72 | 12.6 | -- | -- | -- | -- |
| 340.47 | 0.859 | 8.46 | -- | -- | 2.74 | -- | -- | 1.18 | -- | 18.1 | 24549 | -- | -- |
| 598.7 | 1.14 | 8.35 | -- | -- | -- | -- | -- | 1.72 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 300.32 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 2 | 302.08 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 3 | 302.86 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 4 | 304.73 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 5 | 305.24 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 12 | 310.13 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 14 | 310.31 | radiation | 20 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 15 | 310.56 | radiation | 1 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 16 | 310.59 | radiation | 30 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 21 | 311.78 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 5 |
| 24 | 311.94 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 38 | 313.34 | radiation | 40 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 39 | 313.45 | radiation | 20 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 48 | 314.02 | radiation | 20 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 52 | 314.29 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 54 | 314.31 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 2 |
| 65 | 314.87 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 68 | 314.95 | radiation | 20 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 87 | 315.10 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 7 |
| 90 | 315.18 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 131 | 316.01 | radiation | 30 | 43200 | < th | dose dependent | rect. | 10 | 5 |
| 134 | 316.04 | radiation | 30 | 43200 | < th | dose dependent | rect. | 8 | 8 |
| 154 | 316.29 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 168 | 316.58 | radiation | 40 | 43200 | > th | dose independent | sin | 16 | NA |
| 181 | 316.83 | radiation | 30 | 43200 | < th | dose dependent | rect. | 2 | 13 |
| 206 | 317.02 | wind | 7 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 270 | 317.44 | radiation | 30 | 43200 | < th | dose dependent | sin | 2 | NA |
| 278 | 317.53 | radiation | 20 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 285 | 317.55 | radiation | 20 | 43200 | > th | dose independent | rect. | 6 | 10 |
| 310 | 317.65 | radiation | 30 | 43200 | < th | dose dependent | rect. | 7 | 4 |
| 318 | 317.69 | radiation | 20 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 326 | 317.74 | wind | 7 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 358 | 317.81 | radiation | 20 | 43200 | > th | dose independent | sin | 4 | NA |
| 423 | 318.02 | radiation | 20 | 43200 | > th | dose independent | rect. | 6 | 5 |
| 439 | 318.05 | radiation | 20 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 473 | 318.14 | radiation | 20 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 524 | 318.23 | radiation | 20 | 43200 | > th | dose independent | rect. | 15 | 20 |
| 599 | 318.45 | radiation | 20 | 43200 | > th | dose independent | no | NA | NA |
| 791 | 318.62 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 7 |
| 853 | 318.85 | radiation | 20 | 43200 | > th | dose independent | rect. | 9 | 23 |
| 889 | 318.90 | radiation | 20 | 43200 | < th | dose independent | rect. | 9 | 18 |
| 982 | 319.03 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 8 |