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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0679400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.34 (0.0594) R2 : 0.232
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.909 (0.179) R2dE : 0.0619 R2E : -0.133
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.57 (0.141) R2dN8 : 0.365 R2N8 : 0.17
σ : 1.07
deviance : 529.48
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 3.01
memory length : 17592
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
505.69 1.06 3.47 -1.62 0.553 0.757 -0.718 4.47 1.06 0.187 0.92 4290 -- --
516.39 1.06 3.36 -1.02 0.333 0.706 -1.04 -- 1.25 23.8 6.03 8852 -- --
506.06 1.05 3.46 -1.58 0.594 0.717 -- 4.56 1.04 0.151 0.91 4221 -- --
512.1 1.05 3.33 -1.02 0.431 0.684 -- -- 1.29 23.9 5.48 17497 -- --
526.81 1.07 3.46 -1.59 -- 0.862 -- 4.76 1.07 -- 0.87 4339 -- --
531.47 1.08 3.38 -0.725 0.488 -- -0.963 -- 1.17 0.0751 -- -- -- --
535.47 1.08 3.38 -0.687 0.492 -- -- -- 1.17 23.9 -- -- -- --
522.07 1.06 3.34 -0.723 -- 0.845 -- -- 1.42 -- 4.658 17599 -- --
521.19 1.06 3.37 -- 0.443 0.615 -- -- 1.4 23.9 10.75 17323 -- --
550.7 1.1 3.37 -0.672 -- -- -- -- 1.18 -- -- -- -- --
547.91 1.09 3.36 -- 0.483 -- -- -- 1.25 23.9 -- -- -- --
529.48 1.07 3.34 -- -- 0.909 -- -- 1.57 -- 3.01 17592 -- --
562.6 1.11 3.35 -- -- -- -- -- 1.25 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 491.00 wind 3.0 14400 < th dose dependent rect. 20 2
3 493.74 wind 3.0 14400 < th dose dependent rect. 19 5
9 495.10 wind 1.0 14400 > th dose independent rect. 20 5
11 495.60 wind 1.0 14400 < th dose independent rect. 20 5
12 495.84 wind 1.0 14400 < th dose independent rect. 20 3
14 496.02 temperature 30.0 270 < th dose dependent rect. 17 8
18 496.31 temperature 30.0 90 < th dose dependent rect. 19 8
24 496.65 temperature 30.0 10 < th dose dependent rect. 19 9
25 496.71 radiation 1.0 4320 < th dose dependent rect. 5 1
32 497.20 temperature 30.0 270 < th dose dependent rect. 6 19
35 497.29 wind 1.0 14400 < th dose dependent rect. 10 2
36 497.29 wind 3.0 14400 < th dose dependent rect. 14 13
39 497.40 wind 3.0 14400 < th dose dependent rect. 15 11
42 497.51 radiation 1.0 4320 < th dose independent rect. 17 14
47 497.74 wind 3.0 14400 < th dose dependent rect. 10 17
50 497.88 radiation 1.0 4320 < th dose independent rect. 5 1
52 497.93 temperature 25.0 1440 > th dose dependent rect. 6 2
53 497.94 radiation 1.0 4320 < th dose dependent rect. 22 8
54 497.96 radiation 1.0 4320 < th dose dependent rect. 20 10
58 498.02 radiation 1.0 4320 < th dose dependent rect. 24 6
66 498.14 radiation 1.0 4320 > th dose independent rect. 5 1
67 498.14 radiation 1.0 4320 < th dose dependent rect. 3 3
78 498.30 humidity 90.0 43200 > th dose dependent rect. 4 1
106 498.79 radiation 1.0 4320 > th dose independent rect. 17 14
110 498.85 temperature 25.0 1440 < th dose independent rect. 6 1
117 498.96 wind 3.0 14400 < th dose dependent rect. 6 18
122 499.02 wind 1.0 43200 > th dose independent rect. 23 1
123 499.03 wind 1.0 14400 < th dose dependent sin 16 NA
124 499.03 radiation 1.0 4320 < th dose dependent rect. 17 13
127 499.04 wind 5.0 90 < th dose independent rect. 19 8
128 499.04 temperature 20.0 10 < th dose dependent rect. 4 2
138 499.20 wind 3.0 14400 > th dose independent rect. 14 13
140 499.22 wind 3.0 14400 > th dose independent rect. 6 20
159 499.40 wind 3.0 14400 < th dose independent rect. 6 18
163 499.42 wind 3.0 14400 > th dose independent rect. 6 18
164 499.42 wind 3.0 14400 < th dose independent rect. 6 20
166 499.44 temperature 25.0 1440 > th dose independent rect. 6 1
179 499.56 radiation 1.0 4320 < th dose independent rect. 22 8
182 499.58 radiation 1.0 4320 < th dose independent rect. 20 10
201 499.69 radiation 1.0 4320 < th dose independent rect. 24 6
204 499.70 temperature 30.0 270 < th dose dependent rect. 19 3
210 499.74 wind 1.0 14400 > th dose independent rect. 10 17
211 499.74 temperature 20.0 10 < th dose dependent rect. 6 1
217 499.77 radiation 1.0 4320 < th dose independent rect. 17 1
219 499.82 radiation 1.0 4320 < th dose independent rect. 3 3
222 499.83 wind 3.0 14400 < th dose independent rect. 14 13
231 499.88 wind 1.0 14400 > th dose independent rect. 10 15
234 499.89 temperature 30.0 10 < th dose dependent rect. 6 22
245 499.98 humidity 70.0 43200 < th dose independent rect. 18 1
248 499.99 wind 3.0 14400 < th dose independent rect. 6 11
253 500.00 wind 1.0 14400 > th dose independent rect. 8 16
296 500.25 wind 1.0 14400 < th dose independent rect. 10 17
313 500.37 wind 3.0 14400 < th dose independent rect. 8 18
321 500.45 precipitation 0.1 43200 < th dose independent rect. 1 1
323 500.45 precipitation 0.1 43200 < th dose dependent rect. 1 1
325 500.47 wind 1.0 14400 < th dose independent rect. 10 15
345 500.60 wind 3.0 14400 > th dose independent rect. 6 11
360 500.69 radiation 1.0 43200 > th dose independent rect. 18 1
372 500.70 radiation 1.0 43200 < th dose independent rect. 18 7
380 500.71 radiation 1.0 43200 < th dose independent rect. 18 10
389 500.76 radiation 1.0 43200 < th dose independent rect. 18 5
391 500.77 radiation 1.0 43200 < th dose independent rect. 18 1
401 500.81 wind 1.0 14400 > th dose independent rect. 11 1
407 500.82 wind 1.0 14400 > th dose independent rect. 10 13
421 500.88 precipitation 0.1 43200 > th dose independent rect. 1 1
424 500.88 precipitation 0.1 43200 > th dose dependent rect. 1 1
429 500.90 wind 1.0 14400 > th dose independent sin 17 NA
440 500.97 wind 1.0 14400 < th dose independent rect. 10 13
496 501.24 radiation 1.0 43200 < th dose dependent rect. 18 11
502 501.26 humidity 90.0 43200 > th dose dependent rect. 2 9
503 501.27 radiation 1.0 4320 > th dose independent rect. 17 1
520 501.36 humidity 90.0 43200 > th dose dependent rect. 21 9
525 501.39 radiation 1.0 43200 < th dose dependent rect. 18 1
529 501.40 radiation 1.0 4320 < th dose independent rect. 17 9
533 501.40 radiation 1.0 43200 < th dose dependent rect. 18 5
534 501.40 radiation 1.0 43200 < th dose dependent rect. 18 7
546 501.43 radiation 1.0 4320 < th dose independent rect. 17 11
562 501.48 humidity 90.0 43200 > th dose independent rect. 22 2
564 501.48 humidity 90.0 43200 > th dose dependent rect. 2 12
586 501.57 wind 1.0 14400 < th dose independent rect. 11 1
587 501.57 humidity 70.0 43200 > th dose independent rect. 18 1
589 501.57 wind 9.0 270 < th dose dependent rect. 18 7
596 501.59 humidity 90.0 43200 < th dose independent rect. 3 1
613 501.63 humidity 90.0 43200 > th dose dependent rect. 23 1
615 501.63 humidity 90.0 43200 > th dose dependent rect. 21 14
624 501.66 humidity 90.0 43200 > th dose dependent sin 8 NA
633 501.67 humidity 90.0 43200 > th dose dependent rect. 21 17
636 501.68 humidity 90.0 43200 > th dose dependent rect. 23 12
645 501.70 humidity 80.0 43200 < th dose dependent rect. 18 1
657 501.71 humidity 90.0 43200 > th dose dependent rect. 23 15
668 501.73 temperature 20.0 10 < th dose independent rect. 4 2
670 501.74 wind 1.0 14400 < th dose independent sin 17 NA
734 501.86 radiation 1.0 4320 < th dose independent sin 12 NA
749 501.87 humidity 90.0 43200 > th dose dependent rect. 10 20
756 501.89 precipitation 0.1 43200 > th dose independent rect. 22 4
759 501.89 precipitation 0.1 43200 > th dose dependent rect. 22 4
767 501.91 precipitation 0.1 43200 < th dose independent rect. 22 4
770 501.91 precipitation 0.1 43200 < th dose dependent rect. 22 4
773 501.92 humidity 90.0 43200 > th dose dependent rect. 12 18
862 502.10 precipitation 0.1 43200 > th dose independent rect. 21 6
888 502.15 precipitation 0.1 43200 < th dose independent rect. 21 6
889 502.15 precipitation 0.1 43200 < th dose dependent rect. 21 6
917 502.21 humidity 90.0 43200 > th dose dependent rect. 21 4
929 502.24 wind 3.0 14400 < th dose independent rect. 5 15
936 502.25 wind 3.0 14400 > th dose independent rect. 5 15
937 502.25 radiation 1.0 4320 < th dose dependent rect. 17 9
980 502.31 precipitation 0.1 43200 > th dose dependent rect. 21 6
996 502.33 radiation 1.0 4320 < th dose independent rect. 11 20